Gene : Carub.0006s3016 C. rubella v1.1
Defline:  (1 of 2) PTHR11751//PTHR11751:SF380 - SUBGROUP I AMINOTRANSFERASE RELATED // 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2-RELATED Genomic Order:  3016
Name:  ? Carub.0006s3016 Secondary Identifier:  ? PAC:39246771
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ETHYL-PWY Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3016 0.5kb upstream 0.5kb upstream 2415 true scaffold_6: 13682766-13685180 Capsella rubella
Carub.0006s3016 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 13682766-13683265 Capsella rubella
Carub.0006s3016 0.5kb downstream 0.5kb downstream 2415 true scaffold_6: 13683266-13685680 Capsella rubella
Carub.0006s3016 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 13685181-13685680 Capsella rubella
Carub.0006s3016 1.0kb upstream 1.0kb upstream 2915 true scaffold_6: 13682266-13685180 Capsella rubella
Carub.0006s3016 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 13682266-13683265 Capsella rubella
Carub.0006s3016 1.0kb downstream 1.0kb downstream 2915 true scaffold_6: 13683266-13686180 Capsella rubella
Carub.0006s3016 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 13685181-13686180 Capsella rubella
Carub.0006s3016 2.0kb upstream 2.0kb upstream 3915 true scaffold_6: 13681266-13685180 Capsella rubella
Carub.0006s3016 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 13681266-13683265 Capsella rubella
Carub.0006s3016 2.0kb downstream 2.0kb downstream 3915 true scaffold_6: 13683266-13687180 Capsella rubella
Carub.0006s3016 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 13685181-13687180 Capsella rubella
Carub.0006s3016 5.0kb upstream 5.0kb upstream 6915 true scaffold_6: 13678266-13685180 Capsella rubella
Carub.0006s3016 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 13678266-13683265 Capsella rubella
Carub.0006s3016 5.0kb downstream 5.0kb downstream 6915 true scaffold_6: 13683266-13690180 Capsella rubella
Carub.0006s3016 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13685181-13690180 Capsella rubella
Carub.0006s3016 10.0kb upstream 10.0kb upstream 11915 true scaffold_6: 13673266-13685180 Capsella rubella
Carub.0006s3016 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 13673266-13683265 Capsella rubella
Carub.0006s3016 10.0kb downstream 10.0kb downstream 11915 true scaffold_6: 13683266-13695180 Capsella rubella
Carub.0006s3016 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13685181-13695180 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370196 5261 Brassicaceae View MSA
123832800 5264 Brassicales-Malvales View MSA
124351363 5266 SBM View MSA
124243868 5268 Malvidae View MSA
124064739 5270 Rosid View MSA
123742797 5271 Pentapetalae View MSA
122787155 5272 Eudicot View MSA
122050094 5273 Angiosperm View MSA
121311735 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain