Gene : Carub.0007s0667 C. rubella v1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF5 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARTATE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  667
Name:  ? Carub.0007s0667 Secondary Identifier:  ? PAC:39232388
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0667 0.5kb upstream 0.5kb upstream 4776 true scaffold_7: 2481642-2486417 Capsella rubella
Carub.0007s0667 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 2481642-2482141 Capsella rubella
Carub.0007s0667 0.5kb downstream 0.5kb downstream 4776 true scaffold_7: 2482142-2486917 Capsella rubella
Carub.0007s0667 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 2486418-2486917 Capsella rubella
Carub.0007s0667 1.0kb upstream 1.0kb upstream 5276 true scaffold_7: 2481142-2486417 Capsella rubella
Carub.0007s0667 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 2481142-2482141 Capsella rubella
Carub.0007s0667 1.0kb downstream 1.0kb downstream 5276 true scaffold_7: 2482142-2487417 Capsella rubella
Carub.0007s0667 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 2486418-2487417 Capsella rubella
Carub.0007s0667 2.0kb upstream 2.0kb upstream 6276 true scaffold_7: 2480142-2486417 Capsella rubella
Carub.0007s0667 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 2480142-2482141 Capsella rubella
Carub.0007s0667 2.0kb downstream 2.0kb downstream 6276 true scaffold_7: 2482142-2488417 Capsella rubella
Carub.0007s0667 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 2486418-2488417 Capsella rubella
Carub.0007s0667 5.0kb upstream 5.0kb upstream 9276 true scaffold_7: 2477142-2486417 Capsella rubella
Carub.0007s0667 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 2477142-2482141 Capsella rubella
Carub.0007s0667 5.0kb downstream 5.0kb downstream 9276 true scaffold_7: 2482142-2491417 Capsella rubella
Carub.0007s0667 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 2486418-2491417 Capsella rubella
Carub.0007s0667 10.0kb upstream 10.0kb upstream 14276 true scaffold_7: 2472142-2486417 Capsella rubella
Carub.0007s0667 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 2472142-2482141 Capsella rubella
Carub.0007s0667 10.0kb downstream 10.0kb downstream 14276 true scaffold_7: 2482142-2496417 Capsella rubella
Carub.0007s0667 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 2486418-2496417 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368024 5261 Brassicaceae View MSA
123833366 5264 Brassicales-Malvales View MSA
124350265 5266 SBM View MSA
124243191 5268 Malvidae View MSA
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain