Gene : Carub.0007s0464 C. rubella v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  464
Name:  ? Carub.0007s0464 Secondary Identifier:  ? PAC:39234078
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0464 0.5kb upstream 0.5kb upstream 710 true scaffold_7: 1745500-1746209 Capsella rubella
Carub.0007s0464 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1745710-1746209 Capsella rubella
Carub.0007s0464 0.5kb downstream 0.5kb downstream 710 true scaffold_7: 1745000-1745709 Capsella rubella
Carub.0007s0464 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1745000-1745499 Capsella rubella
Carub.0007s0464 1.0kb upstream 1.0kb upstream 1210 true scaffold_7: 1745500-1746709 Capsella rubella
Carub.0007s0464 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1745710-1746709 Capsella rubella
Carub.0007s0464 1.0kb downstream 1.0kb downstream 1210 true scaffold_7: 1744500-1745709 Capsella rubella
Carub.0007s0464 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1744500-1745499 Capsella rubella
Carub.0007s0464 2.0kb upstream 2.0kb upstream 2210 true scaffold_7: 1745500-1747709 Capsella rubella
Carub.0007s0464 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1745710-1747709 Capsella rubella
Carub.0007s0464 2.0kb downstream 2.0kb downstream 2210 true scaffold_7: 1743500-1745709 Capsella rubella
Carub.0007s0464 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1743500-1745499 Capsella rubella
Carub.0007s0464 5.0kb upstream 5.0kb upstream 5210 true scaffold_7: 1745500-1750709 Capsella rubella
Carub.0007s0464 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1745710-1750709 Capsella rubella
Carub.0007s0464 5.0kb downstream 5.0kb downstream 5210 true scaffold_7: 1740500-1745709 Capsella rubella
Carub.0007s0464 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1740500-1745499 Capsella rubella
Carub.0007s0464 10.0kb upstream 10.0kb upstream 10210 true scaffold_7: 1745500-1755709 Capsella rubella
Carub.0007s0464 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1745710-1755709 Capsella rubella
Carub.0007s0464 10.0kb downstream 10.0kb downstream 10210 true scaffold_7: 1735500-1745709 Capsella rubella
Carub.0007s0464 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1735500-1745499 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377241 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain