Gene : Carub.0007s0453 C. rubella v1.1
Defline:  (1 of 1) PTHR12161//PTHR12161:SF19 - UNCHARACTERIZED DUF292 // REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  453
Name:  ? Carub.0007s0453 Secondary Identifier:  ? PAC:39232351
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0453 0.5kb upstream 0.5kb upstream 2774 true scaffold_7: 1713566-1716339 Capsella rubella
Carub.0007s0453 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1715840-1716339 Capsella rubella
Carub.0007s0453 0.5kb downstream 0.5kb downstream 2774 true scaffold_7: 1713066-1715839 Capsella rubella
Carub.0007s0453 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1713066-1713565 Capsella rubella
Carub.0007s0453 1.0kb upstream 1.0kb upstream 3274 true scaffold_7: 1713566-1716839 Capsella rubella
Carub.0007s0453 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1715840-1716839 Capsella rubella
Carub.0007s0453 1.0kb downstream 1.0kb downstream 3274 true scaffold_7: 1712566-1715839 Capsella rubella
Carub.0007s0453 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1712566-1713565 Capsella rubella
Carub.0007s0453 2.0kb upstream 2.0kb upstream 4274 true scaffold_7: 1713566-1717839 Capsella rubella
Carub.0007s0453 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1715840-1717839 Capsella rubella
Carub.0007s0453 2.0kb downstream 2.0kb downstream 4274 true scaffold_7: 1711566-1715839 Capsella rubella
Carub.0007s0453 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1711566-1713565 Capsella rubella
Carub.0007s0453 5.0kb upstream 5.0kb upstream 7274 true scaffold_7: 1713566-1720839 Capsella rubella
Carub.0007s0453 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1715840-1720839 Capsella rubella
Carub.0007s0453 5.0kb downstream 5.0kb downstream 7274 true scaffold_7: 1708566-1715839 Capsella rubella
Carub.0007s0453 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1708566-1713565 Capsella rubella
Carub.0007s0453 10.0kb upstream 10.0kb upstream 12274 true scaffold_7: 1713566-1725839 Capsella rubella
Carub.0007s0453 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1715840-1725839 Capsella rubella
Carub.0007s0453 10.0kb downstream 10.0kb downstream 12274 true scaffold_7: 1703566-1715839 Capsella rubella
Carub.0007s0453 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1703566-1713565 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026573 5273 Angiosperm View MSA
122361871 5261 Brassicaceae View MSA
123834169 5264 Brassicales-Malvales View MSA
124321930 5266 SBM View MSA
124241944 5268 Malvidae View MSA
124050952 5270 Rosid View MSA
123738388 5271 Pentapetalae View MSA
122790971 5272 Eudicot View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain