Gene : Carub.0007s0196 C. rubella v1.1
Defline:  (1 of 2) 2.1.1.203 - tRNA (cytosine(34)-C(5))-methyltransferase Genomic Order:  196
Name:  ? Carub.0007s0196 Secondary Identifier:  ? PAC:39234418
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6829 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0196 0.5kb upstream 0.5kb upstream 4089 true scaffold_7: 700956-705044 Capsella rubella
Carub.0007s0196 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 704545-705044 Capsella rubella
Carub.0007s0196 0.5kb downstream 0.5kb downstream 4089 true scaffold_7: 700456-704544 Capsella rubella
Carub.0007s0196 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 700456-700955 Capsella rubella
Carub.0007s0196 1.0kb upstream 1.0kb upstream 4589 true scaffold_7: 700956-705544 Capsella rubella
Carub.0007s0196 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 704545-705544 Capsella rubella
Carub.0007s0196 1.0kb downstream 1.0kb downstream 4589 true scaffold_7: 699956-704544 Capsella rubella
Carub.0007s0196 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 699956-700955 Capsella rubella
Carub.0007s0196 2.0kb upstream 2.0kb upstream 5589 true scaffold_7: 700956-706544 Capsella rubella
Carub.0007s0196 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 704545-706544 Capsella rubella
Carub.0007s0196 2.0kb downstream 2.0kb downstream 5589 true scaffold_7: 698956-704544 Capsella rubella
Carub.0007s0196 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 698956-700955 Capsella rubella
Carub.0007s0196 5.0kb upstream 5.0kb upstream 8589 true scaffold_7: 700956-709544 Capsella rubella
Carub.0007s0196 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 704545-709544 Capsella rubella
Carub.0007s0196 5.0kb downstream 5.0kb downstream 8589 true scaffold_7: 695956-704544 Capsella rubella
Carub.0007s0196 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 695956-700955 Capsella rubella
Carub.0007s0196 10.0kb upstream 10.0kb upstream 13589 true scaffold_7: 700956-714544 Capsella rubella
Carub.0007s0196 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 704545-714544 Capsella rubella
Carub.0007s0196 10.0kb downstream 10.0kb downstream 13589 true scaffold_7: 690956-704544 Capsella rubella
Carub.0007s0196 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 690956-700955 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368529 5261 Brassicaceae View MSA
123799592 5264 Brassicales-Malvales View MSA
124297094 5266 SBM View MSA
124251065 5268 Malvidae View MSA
123952562 5270 Rosid View MSA
123530294 5271 Pentapetalae View MSA
122565260 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain