Gene : Carub.0007s0248 C. rubella v1.1
Defline:  (1 of 4) PTHR11751//PTHR11751:SF431 - SUBGROUP I AMINOTRANSFERASE RELATED // 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4-RELATED Genomic Order:  248
Name:  ? Carub.0007s0248 Secondary Identifier:  ? PAC:39235104
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ETHYL-PWY Capsella rubella pathologic  
Crubella PWY-7270 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0248 0.5kb upstream 0.5kb upstream 2203 true scaffold_7: 876628-878830 Capsella rubella
Carub.0007s0248 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 878331-878830 Capsella rubella
Carub.0007s0248 0.5kb downstream 0.5kb downstream 2203 true scaffold_7: 876128-878330 Capsella rubella
Carub.0007s0248 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 876128-876627 Capsella rubella
Carub.0007s0248 1.0kb upstream 1.0kb upstream 2703 true scaffold_7: 876628-879330 Capsella rubella
Carub.0007s0248 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 878331-879330 Capsella rubella
Carub.0007s0248 1.0kb downstream 1.0kb downstream 2703 true scaffold_7: 875628-878330 Capsella rubella
Carub.0007s0248 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 875628-876627 Capsella rubella
Carub.0007s0248 2.0kb upstream 2.0kb upstream 3703 true scaffold_7: 876628-880330 Capsella rubella
Carub.0007s0248 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 878331-880330 Capsella rubella
Carub.0007s0248 2.0kb downstream 2.0kb downstream 3703 true scaffold_7: 874628-878330 Capsella rubella
Carub.0007s0248 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 874628-876627 Capsella rubella
Carub.0007s0248 5.0kb upstream 5.0kb upstream 6703 true scaffold_7: 876628-883330 Capsella rubella
Carub.0007s0248 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 878331-883330 Capsella rubella
Carub.0007s0248 5.0kb downstream 5.0kb downstream 6703 true scaffold_7: 871628-878330 Capsella rubella
Carub.0007s0248 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 871628-876627 Capsella rubella
Carub.0007s0248 10.0kb upstream 10.0kb upstream 11703 true scaffold_7: 876628-888330 Capsella rubella
Carub.0007s0248 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 878331-888330 Capsella rubella
Carub.0007s0248 10.0kb downstream 10.0kb downstream 11703 true scaffold_7: 866628-878330 Capsella rubella
Carub.0007s0248 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 866628-876627 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366718 5261 Brassicaceae View MSA
123836174 5264 Brassicales-Malvales View MSA
124340676 5266 SBM View MSA
124247956 5268 Malvidae View MSA
124066319 5270 Rosid View MSA
123745403 5271 Pentapetalae View MSA
122791160 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain