Gene : Carub.0007s0239 C. rubella v1.1
Defline:  (1 of 1) K02266 - cytochrome c oxidase subunit 6a (COX6A) Genomic Order:  239
Name:  ? Carub.0007s0239 Secondary Identifier:  ? PAC:39235213
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3781 Capsella rubella pathologic  
Crubella PWY-7279 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0239 0.5kb upstream 0.5kb upstream 1847 true scaffold_7: 837411-839257 Capsella rubella
Carub.0007s0239 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 837411-837910 Capsella rubella
Carub.0007s0239 0.5kb downstream 0.5kb downstream 1847 true scaffold_7: 837911-839757 Capsella rubella
Carub.0007s0239 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 839258-839757 Capsella rubella
Carub.0007s0239 1.0kb upstream 1.0kb upstream 2347 true scaffold_7: 836911-839257 Capsella rubella
Carub.0007s0239 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 836911-837910 Capsella rubella
Carub.0007s0239 1.0kb downstream 1.0kb downstream 2347 true scaffold_7: 837911-840257 Capsella rubella
Carub.0007s0239 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 839258-840257 Capsella rubella
Carub.0007s0239 2.0kb upstream 2.0kb upstream 3347 true scaffold_7: 835911-839257 Capsella rubella
Carub.0007s0239 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 835911-837910 Capsella rubella
Carub.0007s0239 2.0kb downstream 2.0kb downstream 3347 true scaffold_7: 837911-841257 Capsella rubella
Carub.0007s0239 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 839258-841257 Capsella rubella
Carub.0007s0239 5.0kb upstream 5.0kb upstream 6347 true scaffold_7: 832911-839257 Capsella rubella
Carub.0007s0239 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 832911-837910 Capsella rubella
Carub.0007s0239 5.0kb downstream 5.0kb downstream 6347 true scaffold_7: 837911-844257 Capsella rubella
Carub.0007s0239 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 839258-844257 Capsella rubella
Carub.0007s0239 10.0kb upstream 10.0kb upstream 11347 true scaffold_7: 827911-839257 Capsella rubella
Carub.0007s0239 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 827911-837910 Capsella rubella
Carub.0007s0239 10.0kb downstream 10.0kb downstream 11347 true scaffold_7: 837911-849257 Capsella rubella
Carub.0007s0239 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 839258-849257 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360303 5261 Brassicaceae View MSA
123835033 5264 Brassicales-Malvales View MSA
124338719 5266 SBM View MSA
124238315 5268 Malvidae View MSA
124061268 5270 Rosid View MSA
123742807 5271 Pentapetalae View MSA
122787280 5272 Eudicot View MSA
122043726 5273 Angiosperm View MSA
121349010 5274 Embryophyte View MSA
123424511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain