Gene : Carub.0006s3542 C. rubella v1.1
Defline:  (1 of 1) PTHR30612//PTHR30612:SF4 - SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM // SUBFAMILY NOT NAMED Genomic Order:  3542
Name:  ? Carub.0006s3542 Secondary Identifier:  ? PAC:39249842
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3542 0.5kb upstream 0.5kb upstream 5713 true scaffold_6: 15907829-15913541 Capsella rubella
Carub.0006s3542 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15907829-15908328 Capsella rubella
Carub.0006s3542 0.5kb downstream 0.5kb downstream 5713 true scaffold_6: 15908329-15914041 Capsella rubella
Carub.0006s3542 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15913542-15914041 Capsella rubella
Carub.0006s3542 1.0kb upstream 1.0kb upstream 6213 true scaffold_6: 15907329-15913541 Capsella rubella
Carub.0006s3542 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15907329-15908328 Capsella rubella
Carub.0006s3542 1.0kb downstream 1.0kb downstream 6213 true scaffold_6: 15908329-15914541 Capsella rubella
Carub.0006s3542 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15913542-15914541 Capsella rubella
Carub.0006s3542 2.0kb upstream 2.0kb upstream 7213 true scaffold_6: 15906329-15913541 Capsella rubella
Carub.0006s3542 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15906329-15908328 Capsella rubella
Carub.0006s3542 2.0kb downstream 2.0kb downstream 7213 true scaffold_6: 15908329-15915541 Capsella rubella
Carub.0006s3542 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15913542-15915541 Capsella rubella
Carub.0006s3542 5.0kb upstream 5.0kb upstream 10213 true scaffold_6: 15903329-15913541 Capsella rubella
Carub.0006s3542 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15903329-15908328 Capsella rubella
Carub.0006s3542 5.0kb downstream 5.0kb downstream 10213 true scaffold_6: 15908329-15918541 Capsella rubella
Carub.0006s3542 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15913542-15918541 Capsella rubella
Carub.0006s3542 10.0kb upstream 10.0kb upstream 15213 true scaffold_6: 15898329-15913541 Capsella rubella
Carub.0006s3542 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15898329-15908328 Capsella rubella
Carub.0006s3542 10.0kb downstream 10.0kb downstream 15213 true scaffold_6: 15908329-15923541 Capsella rubella
Carub.0006s3542 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15913542-15923541 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375114 5261 Brassicaceae View MSA
123832333 5264 Brassicales-Malvales View MSA
124345848 5266 SBM View MSA
124242672 5268 Malvidae View MSA
124067492 5270 Rosid View MSA
123740591 5271 Pentapetalae View MSA
122790576 5272 Eudicot View MSA
122047276 5273 Angiosperm View MSA
121346470 5274 Embryophyte View MSA
123428614 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain