Gene : Carub.0006s1562 C. rubella v1.1
Defline:  (1 of 3) K01885 - glutamyl-tRNA synthetase (EARS, gltX) Genomic Order:  1562
Name:  ? Carub.0006s1562 Secondary Identifier:  ? PAC:39247480
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5188 Capsella rubella pathologic  
Crubella PWY-5918 Capsella rubella pathologic  
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1562 0.5kb upstream 0.5kb upstream 4105 true scaffold_6: 5774534-5778638 Capsella rubella
Carub.0006s1562 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5778139-5778638 Capsella rubella
Carub.0006s1562 0.5kb downstream 0.5kb downstream 4105 true scaffold_6: 5774034-5778138 Capsella rubella
Carub.0006s1562 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5774034-5774533 Capsella rubella
Carub.0006s1562 1.0kb upstream 1.0kb upstream 4605 true scaffold_6: 5774534-5779138 Capsella rubella
Carub.0006s1562 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5778139-5779138 Capsella rubella
Carub.0006s1562 1.0kb downstream 1.0kb downstream 4605 true scaffold_6: 5773534-5778138 Capsella rubella
Carub.0006s1562 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5773534-5774533 Capsella rubella
Carub.0006s1562 2.0kb upstream 2.0kb upstream 5605 true scaffold_6: 5774534-5780138 Capsella rubella
Carub.0006s1562 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5778139-5780138 Capsella rubella
Carub.0006s1562 2.0kb downstream 2.0kb downstream 5605 true scaffold_6: 5772534-5778138 Capsella rubella
Carub.0006s1562 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5772534-5774533 Capsella rubella
Carub.0006s1562 5.0kb upstream 5.0kb upstream 8605 true scaffold_6: 5774534-5783138 Capsella rubella
Carub.0006s1562 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5778139-5783138 Capsella rubella
Carub.0006s1562 5.0kb downstream 5.0kb downstream 8605 true scaffold_6: 5769534-5778138 Capsella rubella
Carub.0006s1562 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5769534-5774533 Capsella rubella
Carub.0006s1562 10.0kb upstream 10.0kb upstream 13605 true scaffold_6: 5774534-5788138 Capsella rubella
Carub.0006s1562 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5778139-5788138 Capsella rubella
Carub.0006s1562 10.0kb downstream 10.0kb downstream 13605 true scaffold_6: 5764534-5778138 Capsella rubella
Carub.0006s1562 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5764534-5774533 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381575 5261 Brassicaceae View MSA
123835075 5264 Brassicales-Malvales View MSA
124339524 5266 SBM View MSA
124249324 5268 Malvidae View MSA
124065023 5270 Rosid View MSA
123740640 5271 Pentapetalae View MSA
122787926 5272 Eudicot View MSA
122046625 5273 Angiosperm View MSA
121349445 5274 Embryophyte View MSA
123426828 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain