Gene : Carub.0006s3452 C. rubella v1.1
Defline:  (1 of 1) K02151 - V-type H+-transporting ATPase subunit F (ATPeV1F, ATP6S14) Genomic Order:  3452
Name:  ? Carub.0006s3452 Secondary Identifier:  ? PAC:39249131
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6126 Capsella rubella pathologic  
Crubella PWY-7219 Capsella rubella pathologic  
Crubella PWY-7229 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3452 0.5kb upstream 0.5kb upstream 2917 true scaffold_6: 15530011-15532927 Capsella rubella
Carub.0006s3452 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15530011-15530510 Capsella rubella
Carub.0006s3452 0.5kb downstream 0.5kb downstream 2917 true scaffold_6: 15530511-15533427 Capsella rubella
Carub.0006s3452 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15532928-15533427 Capsella rubella
Carub.0006s3452 1.0kb upstream 1.0kb upstream 3417 true scaffold_6: 15529511-15532927 Capsella rubella
Carub.0006s3452 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15529511-15530510 Capsella rubella
Carub.0006s3452 1.0kb downstream 1.0kb downstream 3417 true scaffold_6: 15530511-15533927 Capsella rubella
Carub.0006s3452 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15532928-15533927 Capsella rubella
Carub.0006s3452 2.0kb upstream 2.0kb upstream 4417 true scaffold_6: 15528511-15532927 Capsella rubella
Carub.0006s3452 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15528511-15530510 Capsella rubella
Carub.0006s3452 2.0kb downstream 2.0kb downstream 4417 true scaffold_6: 15530511-15534927 Capsella rubella
Carub.0006s3452 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15532928-15534927 Capsella rubella
Carub.0006s3452 5.0kb upstream 5.0kb upstream 7417 true scaffold_6: 15525511-15532927 Capsella rubella
Carub.0006s3452 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15525511-15530510 Capsella rubella
Carub.0006s3452 5.0kb downstream 5.0kb downstream 7417 true scaffold_6: 15530511-15537927 Capsella rubella
Carub.0006s3452 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15532928-15537927 Capsella rubella
Carub.0006s3452 10.0kb upstream 10.0kb upstream 12417 true scaffold_6: 15520511-15532927 Capsella rubella
Carub.0006s3452 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15520511-15530510 Capsella rubella
Carub.0006s3452 10.0kb downstream 10.0kb downstream 12417 true scaffold_6: 15530511-15542927 Capsella rubella
Carub.0006s3452 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15532928-15542927 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376110 5261 Brassicaceae View MSA
123837882 5264 Brassicales-Malvales View MSA
124345507 5266 SBM View MSA
124243289 5268 Malvidae View MSA
124062785 5270 Rosid View MSA
123736748 5271 Pentapetalae View MSA
122792211 5272 Eudicot View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain