Gene : Carub.0006s1778 C. rubella v1.1
Defline:  (1 of 5) PTHR10366:SF362 - ALCOHOL DEHYDROGENASE-RELATED Genomic Order:  1778
Name:  ? Carub.0006s1778 Secondary Identifier:  ? PAC:39247320
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-361 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1778 0.5kb upstream 0.5kb upstream 2425 true scaffold_6: 6591069-6593493 Capsella rubella
Carub.0006s1778 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6591069-6591568 Capsella rubella
Carub.0006s1778 0.5kb downstream 0.5kb downstream 2425 true scaffold_6: 6591569-6593993 Capsella rubella
Carub.0006s1778 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6593494-6593993 Capsella rubella
Carub.0006s1778 1.0kb upstream 1.0kb upstream 2925 true scaffold_6: 6590569-6593493 Capsella rubella
Carub.0006s1778 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6590569-6591568 Capsella rubella
Carub.0006s1778 1.0kb downstream 1.0kb downstream 2925 true scaffold_6: 6591569-6594493 Capsella rubella
Carub.0006s1778 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6593494-6594493 Capsella rubella
Carub.0006s1778 2.0kb upstream 2.0kb upstream 3925 true scaffold_6: 6589569-6593493 Capsella rubella
Carub.0006s1778 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6589569-6591568 Capsella rubella
Carub.0006s1778 2.0kb downstream 2.0kb downstream 3925 true scaffold_6: 6591569-6595493 Capsella rubella
Carub.0006s1778 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6593494-6595493 Capsella rubella
Carub.0006s1778 5.0kb upstream 5.0kb upstream 6925 true scaffold_6: 6586569-6593493 Capsella rubella
Carub.0006s1778 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6586569-6591568 Capsella rubella
Carub.0006s1778 5.0kb downstream 5.0kb downstream 6925 true scaffold_6: 6591569-6598493 Capsella rubella
Carub.0006s1778 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6593494-6598493 Capsella rubella
Carub.0006s1778 10.0kb upstream 10.0kb upstream 11925 true scaffold_6: 6581569-6593493 Capsella rubella
Carub.0006s1778 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6581569-6591568 Capsella rubella
Carub.0006s1778 10.0kb downstream 10.0kb downstream 11925 true scaffold_6: 6591569-6603493 Capsella rubella
Carub.0006s1778 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6593494-6603493 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364957 5261 Brassicaceae View MSA
123837668 5264 Brassicales-Malvales View MSA
124343860 5266 SBM View MSA
124238633 5268 Malvidae View MSA
124067100 5270 Rosid View MSA
123752094 5271 Pentapetalae View MSA
122797549 5272 Eudicot View MSA
122050735 5273 Angiosperm View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain