Gene : Carub.0006s1788 C. rubella v1.1
Defline:  (1 of 1) 2.5.1.22//2.5.1.79 - Spermine synthase / Spermidine aminopropyltransferase // Thermospermine synthase Genomic Order:  1788
Name:  ? Carub.0006s1788 Secondary Identifier:  ? PAC:39249556
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSPECAT-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1788 0.5kb upstream 0.5kb upstream 2645 true scaffold_6: 6622567-6625211 Capsella rubella
Carub.0006s1788 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6624712-6625211 Capsella rubella
Carub.0006s1788 0.5kb downstream 0.5kb downstream 2645 true scaffold_6: 6622067-6624711 Capsella rubella
Carub.0006s1788 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6622067-6622566 Capsella rubella
Carub.0006s1788 1.0kb upstream 1.0kb upstream 3145 true scaffold_6: 6622567-6625711 Capsella rubella
Carub.0006s1788 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6624712-6625711 Capsella rubella
Carub.0006s1788 1.0kb downstream 1.0kb downstream 3145 true scaffold_6: 6621567-6624711 Capsella rubella
Carub.0006s1788 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6621567-6622566 Capsella rubella
Carub.0006s1788 2.0kb upstream 2.0kb upstream 4145 true scaffold_6: 6622567-6626711 Capsella rubella
Carub.0006s1788 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6624712-6626711 Capsella rubella
Carub.0006s1788 2.0kb downstream 2.0kb downstream 4145 true scaffold_6: 6620567-6624711 Capsella rubella
Carub.0006s1788 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6620567-6622566 Capsella rubella
Carub.0006s1788 5.0kb upstream 5.0kb upstream 7145 true scaffold_6: 6622567-6629711 Capsella rubella
Carub.0006s1788 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6624712-6629711 Capsella rubella
Carub.0006s1788 5.0kb downstream 5.0kb downstream 7145 true scaffold_6: 6617567-6624711 Capsella rubella
Carub.0006s1788 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6617567-6622566 Capsella rubella
Carub.0006s1788 10.0kb upstream 10.0kb upstream 12145 true scaffold_6: 6622567-6634711 Capsella rubella
Carub.0006s1788 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6624712-6634711 Capsella rubella
Carub.0006s1788 10.0kb downstream 10.0kb downstream 12145 true scaffold_6: 6612567-6624711 Capsella rubella
Carub.0006s1788 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6612567-6622566 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367295 5261 Brassicaceae View MSA
123830996 5264 Brassicales-Malvales View MSA
124336686 5266 SBM View MSA
124242056 5268 Malvidae View MSA
124068940 5270 Rosid View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain