Gene : Carub.0006s1844 C. rubella v1.1
Defline:  (1 of 3) PTHR10655//PTHR10655:SF34 - LYSOPHOSPHOLIPASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1844
Name:  ? Carub.0006s1844 Secondary Identifier:  ? PAC:39249975
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7409 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1844 0.5kb upstream 0.5kb upstream 3428 true scaffold_6: 6800434-6803861 Capsella rubella
Carub.0006s1844 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6800434-6800933 Capsella rubella
Carub.0006s1844 0.5kb downstream 0.5kb downstream 3428 true scaffold_6: 6800934-6804361 Capsella rubella
Carub.0006s1844 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6803862-6804361 Capsella rubella
Carub.0006s1844 1.0kb upstream 1.0kb upstream 3928 true scaffold_6: 6799934-6803861 Capsella rubella
Carub.0006s1844 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6799934-6800933 Capsella rubella
Carub.0006s1844 1.0kb downstream 1.0kb downstream 3928 true scaffold_6: 6800934-6804861 Capsella rubella
Carub.0006s1844 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6803862-6804861 Capsella rubella
Carub.0006s1844 2.0kb upstream 2.0kb upstream 4928 true scaffold_6: 6798934-6803861 Capsella rubella
Carub.0006s1844 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6798934-6800933 Capsella rubella
Carub.0006s1844 2.0kb downstream 2.0kb downstream 4928 true scaffold_6: 6800934-6805861 Capsella rubella
Carub.0006s1844 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6803862-6805861 Capsella rubella
Carub.0006s1844 5.0kb upstream 5.0kb upstream 7928 true scaffold_6: 6795934-6803861 Capsella rubella
Carub.0006s1844 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6795934-6800933 Capsella rubella
Carub.0006s1844 5.0kb downstream 5.0kb downstream 7928 true scaffold_6: 6800934-6808861 Capsella rubella
Carub.0006s1844 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6803862-6808861 Capsella rubella
Carub.0006s1844 10.0kb upstream 10.0kb upstream 12928 true scaffold_6: 6790934-6803861 Capsella rubella
Carub.0006s1844 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6790934-6800933 Capsella rubella
Carub.0006s1844 10.0kb downstream 10.0kb downstream 12928 true scaffold_6: 6800934-6813861 Capsella rubella
Carub.0006s1844 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6803862-6813861 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377589 5261 Brassicaceae View MSA
123835290 5264 Brassicales-Malvales View MSA
124348957 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain