Gene : Carub.0006s1839 C. rubella v1.1
Defline:  (1 of 2) PTHR24071//PTHR24071:SF7 - FAMILY NOT NAMED // GTP-BINDING NUCLEAR PROTEIN RAN-2 Genomic Order:  1839
Name:  ? Carub.0006s1839 Secondary Identifier:  ? PAC:39248808
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ILEUDEG-PWY Capsella rubella pathologic  
Crubella PWY-5136 Capsella rubella pathologic  
Crubella PWY-5138 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-6435 Capsella rubella pathologic  
Crubella PWY-7036 Capsella rubella pathologic  
Crubella PWY-735 Capsella rubella pathologic  
Crubella PWY-7606 Capsella rubella pathologic  
Crubella VALDEG-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1839 0.5kb upstream 0.5kb upstream 2414 true scaffold_6: 6786740-6789153 Capsella rubella
Carub.0006s1839 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6786740-6787239 Capsella rubella
Carub.0006s1839 0.5kb downstream 0.5kb downstream 2414 true scaffold_6: 6787240-6789653 Capsella rubella
Carub.0006s1839 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6789154-6789653 Capsella rubella
Carub.0006s1839 1.0kb upstream 1.0kb upstream 2914 true scaffold_6: 6786240-6789153 Capsella rubella
Carub.0006s1839 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6786240-6787239 Capsella rubella
Carub.0006s1839 1.0kb downstream 1.0kb downstream 2914 true scaffold_6: 6787240-6790153 Capsella rubella
Carub.0006s1839 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6789154-6790153 Capsella rubella
Carub.0006s1839 2.0kb upstream 2.0kb upstream 3914 true scaffold_6: 6785240-6789153 Capsella rubella
Carub.0006s1839 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6785240-6787239 Capsella rubella
Carub.0006s1839 2.0kb downstream 2.0kb downstream 3914 true scaffold_6: 6787240-6791153 Capsella rubella
Carub.0006s1839 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6789154-6791153 Capsella rubella
Carub.0006s1839 5.0kb upstream 5.0kb upstream 6914 true scaffold_6: 6782240-6789153 Capsella rubella
Carub.0006s1839 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6782240-6787239 Capsella rubella
Carub.0006s1839 5.0kb downstream 5.0kb downstream 6914 true scaffold_6: 6787240-6794153 Capsella rubella
Carub.0006s1839 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6789154-6794153 Capsella rubella
Carub.0006s1839 10.0kb upstream 10.0kb upstream 11914 true scaffold_6: 6777240-6789153 Capsella rubella
Carub.0006s1839 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6777240-6787239 Capsella rubella
Carub.0006s1839 10.0kb downstream 10.0kb downstream 11914 true scaffold_6: 6787240-6799153 Capsella rubella
Carub.0006s1839 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6789154-6799153 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371036 5261 Brassicaceae View MSA
123829338 5264 Brassicales-Malvales View MSA
124347070 5266 SBM View MSA
124237166 5268 Malvidae View MSA
124073929 5270 Rosid View MSA
123749309 5271 Pentapetalae View MSA
122790069 5272 Eudicot View MSA
122051651 5273 Angiosperm View MSA
121349425 5274 Embryophyte View MSA
123424763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain