Gene : Carub.0006s1867 C. rubella v1.1
Defline:  (1 of 2) PTHR12526:SF343 - SUCROSE-PHOSPHATE SYNTHASE 1-RELATED Genomic Order:  1867
Name:  ? Carub.0006s1867 Secondary Identifier:  ? PAC:39248689
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7238 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1867 0.5kb upstream 0.5kb upstream 6298 true scaffold_6: 6871074-6877371 Capsella rubella
Carub.0006s1867 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6876872-6877371 Capsella rubella
Carub.0006s1867 0.5kb downstream 0.5kb downstream 6298 true scaffold_6: 6870574-6876871 Capsella rubella
Carub.0006s1867 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6870574-6871073 Capsella rubella
Carub.0006s1867 1.0kb upstream 1.0kb upstream 6798 true scaffold_6: 6871074-6877871 Capsella rubella
Carub.0006s1867 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6876872-6877871 Capsella rubella
Carub.0006s1867 1.0kb downstream 1.0kb downstream 6798 true scaffold_6: 6870074-6876871 Capsella rubella
Carub.0006s1867 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6870074-6871073 Capsella rubella
Carub.0006s1867 2.0kb upstream 2.0kb upstream 7798 true scaffold_6: 6871074-6878871 Capsella rubella
Carub.0006s1867 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6876872-6878871 Capsella rubella
Carub.0006s1867 2.0kb downstream 2.0kb downstream 7798 true scaffold_6: 6869074-6876871 Capsella rubella
Carub.0006s1867 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6869074-6871073 Capsella rubella
Carub.0006s1867 5.0kb upstream 5.0kb upstream 10798 true scaffold_6: 6871074-6881871 Capsella rubella
Carub.0006s1867 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6876872-6881871 Capsella rubella
Carub.0006s1867 5.0kb downstream 5.0kb downstream 10798 true scaffold_6: 6866074-6876871 Capsella rubella
Carub.0006s1867 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6866074-6871073 Capsella rubella
Carub.0006s1867 10.0kb upstream 10.0kb upstream 15798 true scaffold_6: 6871074-6886871 Capsella rubella
Carub.0006s1867 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6876872-6886871 Capsella rubella
Carub.0006s1867 10.0kb downstream 10.0kb downstream 15798 true scaffold_6: 6861074-6876871 Capsella rubella
Carub.0006s1867 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6861074-6871073 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365865 5261 Brassicaceae View MSA
123829547 5264 Brassicales-Malvales View MSA
124337284 5266 SBM View MSA
124251669 5268 Malvidae View MSA
124062800 5270 Rosid View MSA
123741512 5271 Pentapetalae View MSA
122790617 5272 Eudicot View MSA
122047849 5273 Angiosperm View MSA
121310805 5274 Embryophyte View MSA
123348202 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain