Gene : Carub.0006s1865 C. rubella v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF113 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // SUBFAMILY NOT NAMED Genomic Order:  1865
Name:  ? Carub.0006s1865 Secondary Identifier:  ? PAC:39249316
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5980 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1865 0.5kb upstream 0.5kb upstream 3211 true scaffold_6: 6863783-6866993 Capsella rubella
Carub.0006s1865 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6866494-6866993 Capsella rubella
Carub.0006s1865 0.5kb downstream 0.5kb downstream 3211 true scaffold_6: 6863283-6866493 Capsella rubella
Carub.0006s1865 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6863283-6863782 Capsella rubella
Carub.0006s1865 1.0kb upstream 1.0kb upstream 3711 true scaffold_6: 6863783-6867493 Capsella rubella
Carub.0006s1865 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6866494-6867493 Capsella rubella
Carub.0006s1865 1.0kb downstream 1.0kb downstream 3711 true scaffold_6: 6862783-6866493 Capsella rubella
Carub.0006s1865 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6862783-6863782 Capsella rubella
Carub.0006s1865 2.0kb upstream 2.0kb upstream 4711 true scaffold_6: 6863783-6868493 Capsella rubella
Carub.0006s1865 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6866494-6868493 Capsella rubella
Carub.0006s1865 2.0kb downstream 2.0kb downstream 4711 true scaffold_6: 6861783-6866493 Capsella rubella
Carub.0006s1865 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6861783-6863782 Capsella rubella
Carub.0006s1865 5.0kb upstream 5.0kb upstream 7711 true scaffold_6: 6863783-6871493 Capsella rubella
Carub.0006s1865 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6866494-6871493 Capsella rubella
Carub.0006s1865 5.0kb downstream 5.0kb downstream 7711 true scaffold_6: 6858783-6866493 Capsella rubella
Carub.0006s1865 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6858783-6863782 Capsella rubella
Carub.0006s1865 10.0kb upstream 10.0kb upstream 12711 true scaffold_6: 6863783-6876493 Capsella rubella
Carub.0006s1865 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6866494-6876493 Capsella rubella
Carub.0006s1865 10.0kb downstream 10.0kb downstream 12711 true scaffold_6: 6853783-6866493 Capsella rubella
Carub.0006s1865 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6853783-6863782 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367864 5261 Brassicaceae View MSA
123832735 5264 Brassicales-Malvales View MSA
124351163 5266 SBM View MSA
124252793 5268 Malvidae View MSA
124072198 5270 Rosid View MSA
123751032 5271 Pentapetalae View MSA
122797278 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain