Gene : Carub.0006s2108 C. rubella v1.1
Defline:  (1 of 1) PTHR11404//PTHR11404:SF17 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Genomic Order:  2108
Name:  ? Carub.0006s2108 Secondary Identifier:  ? PAC:39249689
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella DETOX1-PWY Capsella rubella pathologic  
Crubella DETOX1-PWY-1 Capsella rubella pathologic  
Crubella PWY-6854 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2108 0.5kb upstream 0.5kb upstream 2512 true scaffold_6: 7892732-7895243 Capsella rubella
Carub.0006s2108 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7892732-7893231 Capsella rubella
Carub.0006s2108 0.5kb downstream 0.5kb downstream 2512 true scaffold_6: 7893232-7895743 Capsella rubella
Carub.0006s2108 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7895244-7895743 Capsella rubella
Carub.0006s2108 1.0kb upstream 1.0kb upstream 3012 true scaffold_6: 7892232-7895243 Capsella rubella
Carub.0006s2108 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7892232-7893231 Capsella rubella
Carub.0006s2108 1.0kb downstream 1.0kb downstream 3012 true scaffold_6: 7893232-7896243 Capsella rubella
Carub.0006s2108 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7895244-7896243 Capsella rubella
Carub.0006s2108 2.0kb upstream 2.0kb upstream 4012 true scaffold_6: 7891232-7895243 Capsella rubella
Carub.0006s2108 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7891232-7893231 Capsella rubella
Carub.0006s2108 2.0kb downstream 2.0kb downstream 4012 true scaffold_6: 7893232-7897243 Capsella rubella
Carub.0006s2108 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7895244-7897243 Capsella rubella
Carub.0006s2108 5.0kb upstream 5.0kb upstream 7012 true scaffold_6: 7888232-7895243 Capsella rubella
Carub.0006s2108 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7888232-7893231 Capsella rubella
Carub.0006s2108 5.0kb downstream 5.0kb downstream 7012 true scaffold_6: 7893232-7900243 Capsella rubella
Carub.0006s2108 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7895244-7900243 Capsella rubella
Carub.0006s2108 10.0kb upstream 10.0kb upstream 12012 true scaffold_6: 7883232-7895243 Capsella rubella
Carub.0006s2108 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7883232-7893231 Capsella rubella
Carub.0006s2108 10.0kb downstream 10.0kb downstream 12012 true scaffold_6: 7893232-7905243 Capsella rubella
Carub.0006s2108 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7895244-7905243 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365770 5261 Brassicaceae View MSA
123828230 5264 Brassicales-Malvales View MSA
124345837 5266 SBM View MSA
124242563 5268 Malvidae View MSA
124067465 5270 Rosid View MSA
123740223 5271 Pentapetalae View MSA
122788752 5272 Eudicot View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain