Gene : Carub.0006s2130 C. rubella v1.1
Defline:  (1 of 1) PTHR23024//PTHR23024:SF174 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES // SUBFAMILY NOT NAMED Genomic Order:  2130
Name:  ? Carub.0006s2130 Secondary Identifier:  ? PAC:39248978
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6303 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2130 0.5kb upstream 0.5kb upstream 1914 true scaffold_6: 7981825-7983738 Capsella rubella
Carub.0006s2130 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7983239-7983738 Capsella rubella
Carub.0006s2130 0.5kb downstream 0.5kb downstream 1914 true scaffold_6: 7981325-7983238 Capsella rubella
Carub.0006s2130 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7981325-7981824 Capsella rubella
Carub.0006s2130 1.0kb upstream 1.0kb upstream 2414 true scaffold_6: 7981825-7984238 Capsella rubella
Carub.0006s2130 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7983239-7984238 Capsella rubella
Carub.0006s2130 1.0kb downstream 1.0kb downstream 2414 true scaffold_6: 7980825-7983238 Capsella rubella
Carub.0006s2130 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7980825-7981824 Capsella rubella
Carub.0006s2130 2.0kb upstream 2.0kb upstream 3414 true scaffold_6: 7981825-7985238 Capsella rubella
Carub.0006s2130 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7983239-7985238 Capsella rubella
Carub.0006s2130 2.0kb downstream 2.0kb downstream 3414 true scaffold_6: 7979825-7983238 Capsella rubella
Carub.0006s2130 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7979825-7981824 Capsella rubella
Carub.0006s2130 5.0kb upstream 5.0kb upstream 6414 true scaffold_6: 7981825-7988238 Capsella rubella
Carub.0006s2130 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7983239-7988238 Capsella rubella
Carub.0006s2130 5.0kb downstream 5.0kb downstream 6414 true scaffold_6: 7976825-7983238 Capsella rubella
Carub.0006s2130 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7976825-7981824 Capsella rubella
Carub.0006s2130 10.0kb upstream 10.0kb upstream 11414 true scaffold_6: 7981825-7993238 Capsella rubella
Carub.0006s2130 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7983239-7993238 Capsella rubella
Carub.0006s2130 10.0kb downstream 10.0kb downstream 11414 true scaffold_6: 7971825-7983238 Capsella rubella
Carub.0006s2130 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7971825-7981824 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361131 5261 Brassicaceae View MSA
123839910 5264 Brassicales-Malvales View MSA
124340400 5266 SBM View MSA
124248522 5268 Malvidae View MSA
124071643 5270 Rosid View MSA
123749396 5271 Pentapetalae View MSA
122788828 5272 Eudicot View MSA
122043846 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350684 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain