Gene : Carub.0006s2506 C. rubella v1.1
Defline:  (1 of 3) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  2506
Name:  ? Carub.0006s2506 Secondary Identifier:  ? PAC:39247684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2506 0.5kb upstream 0.5kb upstream 2661 true scaffold_6: 9636881-9639541 Capsella rubella
Carub.0006s2506 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 9639042-9639541 Capsella rubella
Carub.0006s2506 0.5kb downstream 0.5kb downstream 2661 true scaffold_6: 9636381-9639041 Capsella rubella
Carub.0006s2506 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 9636381-9636880 Capsella rubella
Carub.0006s2506 1.0kb upstream 1.0kb upstream 3161 true scaffold_6: 9636881-9640041 Capsella rubella
Carub.0006s2506 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 9639042-9640041 Capsella rubella
Carub.0006s2506 1.0kb downstream 1.0kb downstream 3161 true scaffold_6: 9635881-9639041 Capsella rubella
Carub.0006s2506 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 9635881-9636880 Capsella rubella
Carub.0006s2506 2.0kb upstream 2.0kb upstream 4161 true scaffold_6: 9636881-9641041 Capsella rubella
Carub.0006s2506 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 9639042-9641041 Capsella rubella
Carub.0006s2506 2.0kb downstream 2.0kb downstream 4161 true scaffold_6: 9634881-9639041 Capsella rubella
Carub.0006s2506 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 9634881-9636880 Capsella rubella
Carub.0006s2506 5.0kb upstream 5.0kb upstream 7161 true scaffold_6: 9636881-9644041 Capsella rubella
Carub.0006s2506 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 9639042-9644041 Capsella rubella
Carub.0006s2506 5.0kb downstream 5.0kb downstream 7161 true scaffold_6: 9631881-9639041 Capsella rubella
Carub.0006s2506 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 9631881-9636880 Capsella rubella
Carub.0006s2506 10.0kb upstream 10.0kb upstream 12161 true scaffold_6: 9636881-9649041 Capsella rubella
Carub.0006s2506 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 9639042-9649041 Capsella rubella
Carub.0006s2506 10.0kb downstream 10.0kb downstream 12161 true scaffold_6: 9626881-9639041 Capsella rubella
Carub.0006s2506 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 9626881-9636880 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374239 5261 Brassicaceae View MSA
123836475 5264 Brassicales-Malvales View MSA
124340447 5266 SBM View MSA
124237440 5268 Malvidae View MSA
124063833 5270 Rosid View MSA
123738536 5271 Pentapetalae View MSA
122786779 5272 Eudicot View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain