Gene : Carub.0006s1920 C. rubella v1.1
Defline:  (1 of 1) K16274 - E3 ubiquitin-protein ligase AIP2 [EC:6.3.2.19] (AIP2) Genomic Order:  1920
Name:  ? Carub.0006s1920 Secondary Identifier:  ? PAC:39249589
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1920 0.5kb upstream 0.5kb upstream 2398 true scaffold_6: 7112950-7115347 Capsella rubella
Carub.0006s1920 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7114848-7115347 Capsella rubella
Carub.0006s1920 0.5kb downstream 0.5kb downstream 2398 true scaffold_6: 7112450-7114847 Capsella rubella
Carub.0006s1920 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7112450-7112949 Capsella rubella
Carub.0006s1920 1.0kb upstream 1.0kb upstream 2898 true scaffold_6: 7112950-7115847 Capsella rubella
Carub.0006s1920 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7114848-7115847 Capsella rubella
Carub.0006s1920 1.0kb downstream 1.0kb downstream 2898 true scaffold_6: 7111950-7114847 Capsella rubella
Carub.0006s1920 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7111950-7112949 Capsella rubella
Carub.0006s1920 2.0kb upstream 2.0kb upstream 3898 true scaffold_6: 7112950-7116847 Capsella rubella
Carub.0006s1920 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7114848-7116847 Capsella rubella
Carub.0006s1920 2.0kb downstream 2.0kb downstream 3898 true scaffold_6: 7110950-7114847 Capsella rubella
Carub.0006s1920 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7110950-7112949 Capsella rubella
Carub.0006s1920 5.0kb upstream 5.0kb upstream 6898 true scaffold_6: 7112950-7119847 Capsella rubella
Carub.0006s1920 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7114848-7119847 Capsella rubella
Carub.0006s1920 5.0kb downstream 5.0kb downstream 6898 true scaffold_6: 7107950-7114847 Capsella rubella
Carub.0006s1920 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7107950-7112949 Capsella rubella
Carub.0006s1920 10.0kb upstream 10.0kb upstream 11898 true scaffold_6: 7112950-7124847 Capsella rubella
Carub.0006s1920 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7114848-7124847 Capsella rubella
Carub.0006s1920 10.0kb downstream 10.0kb downstream 11898 true scaffold_6: 7102950-7114847 Capsella rubella
Carub.0006s1920 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7102950-7112949 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122369760 5261 Brassicaceae View MSA
123834702 5264 Brassicales-Malvales View MSA
124342804 5266 SBM View MSA
124243056 5268 Malvidae View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain