Gene : Carub.0006s1940 C. rubella v1.1
Defline:  (1 of 3) 1.10.3.2//1.10.3.3 - Laccase / Urishiol oxidase // L-ascorbate oxidase / Ascorbase Genomic Order:  1940
Name:  ? Carub.0006s1940 Secondary Identifier:  ? PAC:39246950
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1940 0.5kb upstream 0.5kb upstream 2941 true scaffold_6: 7189740-7192680 Capsella rubella
Carub.0006s1940 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7189740-7190239 Capsella rubella
Carub.0006s1940 0.5kb downstream 0.5kb downstream 2941 true scaffold_6: 7190240-7193180 Capsella rubella
Carub.0006s1940 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7192681-7193180 Capsella rubella
Carub.0006s1940 1.0kb upstream 1.0kb upstream 3441 true scaffold_6: 7189240-7192680 Capsella rubella
Carub.0006s1940 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7189240-7190239 Capsella rubella
Carub.0006s1940 1.0kb downstream 1.0kb downstream 3441 true scaffold_6: 7190240-7193680 Capsella rubella
Carub.0006s1940 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7192681-7193680 Capsella rubella
Carub.0006s1940 2.0kb upstream 2.0kb upstream 4441 true scaffold_6: 7188240-7192680 Capsella rubella
Carub.0006s1940 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7188240-7190239 Capsella rubella
Carub.0006s1940 2.0kb downstream 2.0kb downstream 4441 true scaffold_6: 7190240-7194680 Capsella rubella
Carub.0006s1940 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7192681-7194680 Capsella rubella
Carub.0006s1940 5.0kb upstream 5.0kb upstream 7441 true scaffold_6: 7185240-7192680 Capsella rubella
Carub.0006s1940 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7185240-7190239 Capsella rubella
Carub.0006s1940 5.0kb downstream 5.0kb downstream 7441 true scaffold_6: 7190240-7197680 Capsella rubella
Carub.0006s1940 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7192681-7197680 Capsella rubella
Carub.0006s1940 10.0kb upstream 10.0kb upstream 12441 true scaffold_6: 7180240-7192680 Capsella rubella
Carub.0006s1940 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7180240-7190239 Capsella rubella
Carub.0006s1940 10.0kb downstream 10.0kb downstream 12441 true scaffold_6: 7190240-7202680 Capsella rubella
Carub.0006s1940 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7192681-7202680 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378805 5261 Brassicaceae View MSA
123833717 5264 Brassicales-Malvales View MSA
124345960 5266 SBM View MSA
124242073 5268 Malvidae View MSA
124063404 5270 Rosid View MSA
123739714 5271 Pentapetalae View MSA
122791263 5272 Eudicot View MSA
122042920 5273 Angiosperm View MSA
121348734 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain