Gene : Carub.0003s2253 C. rubella v1.1
Defline:  (1 of 3) PTHR31803//PTHR31803:SF4 - FAMILY NOT NAMED // UBIQUINOL OXIDASE 1A, MITOCHONDRIAL-RELATED Genomic Order:  2253
Name:  ? Carub.0003s2253 Secondary Identifier:  ? PAC:39242380
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4302 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2253 0.5kb upstream 0.5kb upstream 2344 true scaffold_3: 8134228-8136571 Capsella rubella
Carub.0003s2253 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8134228-8134727 Capsella rubella
Carub.0003s2253 0.5kb downstream 0.5kb downstream 2344 true scaffold_3: 8134728-8137071 Capsella rubella
Carub.0003s2253 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8136572-8137071 Capsella rubella
Carub.0003s2253 1.0kb upstream 1.0kb upstream 2844 true scaffold_3: 8133728-8136571 Capsella rubella
Carub.0003s2253 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8133728-8134727 Capsella rubella
Carub.0003s2253 1.0kb downstream 1.0kb downstream 2844 true scaffold_3: 8134728-8137571 Capsella rubella
Carub.0003s2253 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8136572-8137571 Capsella rubella
Carub.0003s2253 2.0kb upstream 2.0kb upstream 3844 true scaffold_3: 8132728-8136571 Capsella rubella
Carub.0003s2253 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8132728-8134727 Capsella rubella
Carub.0003s2253 2.0kb downstream 2.0kb downstream 3844 true scaffold_3: 8134728-8138571 Capsella rubella
Carub.0003s2253 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8136572-8138571 Capsella rubella
Carub.0003s2253 5.0kb upstream 5.0kb upstream 6844 true scaffold_3: 8129728-8136571 Capsella rubella
Carub.0003s2253 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8129728-8134727 Capsella rubella
Carub.0003s2253 5.0kb downstream 5.0kb downstream 6844 true scaffold_3: 8134728-8141571 Capsella rubella
Carub.0003s2253 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8136572-8141571 Capsella rubella
Carub.0003s2253 10.0kb upstream 10.0kb upstream 11844 true scaffold_3: 8124728-8136571 Capsella rubella
Carub.0003s2253 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8124728-8134727 Capsella rubella
Carub.0003s2253 10.0kb downstream 10.0kb downstream 11844 true scaffold_3: 8134728-8146571 Capsella rubella
Carub.0003s2253 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8136572-8146571 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360781 5261 Brassicaceae View MSA
123828425 5264 Brassicales-Malvales View MSA
124343478 5266 SBM View MSA
124246674 5268 Malvidae View MSA
124071385 5270 Rosid View MSA
123743047 5271 Pentapetalae View MSA
122794845 5272 Eudicot View MSA
122048992 5273 Angiosperm View MSA
121347153 5274 Embryophyte View MSA
123426662 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain