Gene : Carub.0003s2693 C. rubella v1.1
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  2693
Name:  ? Carub.0003s2693 Secondary Identifier:  ? PAC:39241248
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2693 0.5kb upstream 0.5kb upstream 5847 true scaffold_3: 10126298-10132144 Capsella rubella
Carub.0003s2693 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10126298-10126797 Capsella rubella
Carub.0003s2693 0.5kb downstream 0.5kb downstream 5847 true scaffold_3: 10126798-10132644 Capsella rubella
Carub.0003s2693 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10132145-10132644 Capsella rubella
Carub.0003s2693 1.0kb upstream 1.0kb upstream 6347 true scaffold_3: 10125798-10132144 Capsella rubella
Carub.0003s2693 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10125798-10126797 Capsella rubella
Carub.0003s2693 1.0kb downstream 1.0kb downstream 6347 true scaffold_3: 10126798-10133144 Capsella rubella
Carub.0003s2693 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10132145-10133144 Capsella rubella
Carub.0003s2693 2.0kb upstream 2.0kb upstream 7347 true scaffold_3: 10124798-10132144 Capsella rubella
Carub.0003s2693 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10124798-10126797 Capsella rubella
Carub.0003s2693 2.0kb downstream 2.0kb downstream 7347 true scaffold_3: 10126798-10134144 Capsella rubella
Carub.0003s2693 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10132145-10134144 Capsella rubella
Carub.0003s2693 5.0kb upstream 5.0kb upstream 10347 true scaffold_3: 10121798-10132144 Capsella rubella
Carub.0003s2693 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10121798-10126797 Capsella rubella
Carub.0003s2693 5.0kb downstream 5.0kb downstream 10347 true scaffold_3: 10126798-10137144 Capsella rubella
Carub.0003s2693 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10132145-10137144 Capsella rubella
Carub.0003s2693 10.0kb upstream 10.0kb upstream 15347 true scaffold_3: 10116798-10132144 Capsella rubella
Carub.0003s2693 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10116798-10126797 Capsella rubella
Carub.0003s2693 10.0kb downstream 10.0kb downstream 15347 true scaffold_3: 10126798-10142144 Capsella rubella
Carub.0003s2693 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10132145-10142144 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360824 5261 Brassicaceae View MSA
123840370 5264 Brassicales-Malvales View MSA
124350117 5266 SBM View MSA
124253803 5268 Malvidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain