Gene : Carub.0003s2097 C. rubella v1.1
Defline:  (1 of 1) PTHR20275//PTHR20275:SF0 - FAMILY NOT NAMED // ATP-NADH KINASE YEF1-RELATED Genomic Order:  2097
Name:  ? Carub.0003s2097 Secondary Identifier:  ? PAC:39242572
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5083 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2097 0.5kb upstream 0.5kb upstream 4532 true scaffold_3: 7550400-7554931 Capsella rubella
Carub.0003s2097 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7554432-7554931 Capsella rubella
Carub.0003s2097 0.5kb downstream 0.5kb downstream 4532 true scaffold_3: 7549900-7554431 Capsella rubella
Carub.0003s2097 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7549900-7550399 Capsella rubella
Carub.0003s2097 1.0kb upstream 1.0kb upstream 5032 true scaffold_3: 7550400-7555431 Capsella rubella
Carub.0003s2097 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7554432-7555431 Capsella rubella
Carub.0003s2097 1.0kb downstream 1.0kb downstream 5032 true scaffold_3: 7549400-7554431 Capsella rubella
Carub.0003s2097 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7549400-7550399 Capsella rubella
Carub.0003s2097 2.0kb upstream 2.0kb upstream 6032 true scaffold_3: 7550400-7556431 Capsella rubella
Carub.0003s2097 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7554432-7556431 Capsella rubella
Carub.0003s2097 2.0kb downstream 2.0kb downstream 6032 true scaffold_3: 7548400-7554431 Capsella rubella
Carub.0003s2097 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7548400-7550399 Capsella rubella
Carub.0003s2097 5.0kb upstream 5.0kb upstream 9032 true scaffold_3: 7550400-7559431 Capsella rubella
Carub.0003s2097 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7554432-7559431 Capsella rubella
Carub.0003s2097 5.0kb downstream 5.0kb downstream 9032 true scaffold_3: 7545400-7554431 Capsella rubella
Carub.0003s2097 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7545400-7550399 Capsella rubella
Carub.0003s2097 10.0kb upstream 10.0kb upstream 14032 true scaffold_3: 7550400-7564431 Capsella rubella
Carub.0003s2097 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7554432-7564431 Capsella rubella
Carub.0003s2097 10.0kb downstream 10.0kb downstream 14032 true scaffold_3: 7540400-7554431 Capsella rubella
Carub.0003s2097 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7540400-7550399 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379688 5261 Brassicaceae View MSA
123838128 5264 Brassicales-Malvales View MSA
124336611 5266 SBM View MSA
124238337 5268 Malvidae View MSA
124071172 5270 Rosid View MSA
123745020 5271 Pentapetalae View MSA
122792103 5272 Eudicot View MSA
122043063 5273 Angiosperm View MSA
121344083 5274 Embryophyte View MSA
123427357 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain