Gene : Carub.0003s2409 C. rubella v1.1
Defline:  (1 of 2) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  2409
Name:  ? Carub.0003s2409 Secondary Identifier:  ? PAC:39242528
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6622 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2409 0.5kb upstream 0.5kb upstream 6765 true scaffold_3: 8842539-8849303 Capsella rubella
Carub.0003s2409 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8842539-8843038 Capsella rubella
Carub.0003s2409 0.5kb downstream 0.5kb downstream 6765 true scaffold_3: 8843039-8849803 Capsella rubella
Carub.0003s2409 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8849304-8849803 Capsella rubella
Carub.0003s2409 1.0kb upstream 1.0kb upstream 7265 true scaffold_3: 8842039-8849303 Capsella rubella
Carub.0003s2409 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8842039-8843038 Capsella rubella
Carub.0003s2409 1.0kb downstream 1.0kb downstream 7265 true scaffold_3: 8843039-8850303 Capsella rubella
Carub.0003s2409 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8849304-8850303 Capsella rubella
Carub.0003s2409 2.0kb upstream 2.0kb upstream 8265 true scaffold_3: 8841039-8849303 Capsella rubella
Carub.0003s2409 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8841039-8843038 Capsella rubella
Carub.0003s2409 2.0kb downstream 2.0kb downstream 8265 true scaffold_3: 8843039-8851303 Capsella rubella
Carub.0003s2409 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8849304-8851303 Capsella rubella
Carub.0003s2409 5.0kb upstream 5.0kb upstream 11265 true scaffold_3: 8838039-8849303 Capsella rubella
Carub.0003s2409 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8838039-8843038 Capsella rubella
Carub.0003s2409 5.0kb downstream 5.0kb downstream 11265 true scaffold_3: 8843039-8854303 Capsella rubella
Carub.0003s2409 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8849304-8854303 Capsella rubella
Carub.0003s2409 10.0kb upstream 10.0kb upstream 16265 true scaffold_3: 8833039-8849303 Capsella rubella
Carub.0003s2409 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8833039-8843038 Capsella rubella
Carub.0003s2409 10.0kb downstream 10.0kb downstream 16265 true scaffold_3: 8843039-8859303 Capsella rubella
Carub.0003s2409 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8849304-8859303 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372765 5261 Brassicaceae View MSA
123834953 5264 Brassicales-Malvales View MSA
124346454 5266 SBM View MSA
124243383 5268 Malvidae View MSA
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain