Gene : Carub.0003s1898 C. rubella v1.1
Defline:  (1 of 6) 2.5.1.27 - Adenylate dimethylallyltransferase (AMP-dependent) / Isopentenyltransferase Genomic Order:  1898
Name:  ? Carub.0003s1898 Secondary Identifier:  ? PAC:39242193
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2681 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1898 0.5kb upstream 0.5kb upstream 1909 true scaffold_3: 6775695-6777603 Capsella rubella
Carub.0003s1898 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6777104-6777603 Capsella rubella
Carub.0003s1898 0.5kb downstream 0.5kb downstream 1909 true scaffold_3: 6775195-6777103 Capsella rubella
Carub.0003s1898 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6775195-6775694 Capsella rubella
Carub.0003s1898 1.0kb upstream 1.0kb upstream 2409 true scaffold_3: 6775695-6778103 Capsella rubella
Carub.0003s1898 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6777104-6778103 Capsella rubella
Carub.0003s1898 1.0kb downstream 1.0kb downstream 2409 true scaffold_3: 6774695-6777103 Capsella rubella
Carub.0003s1898 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6774695-6775694 Capsella rubella
Carub.0003s1898 2.0kb upstream 2.0kb upstream 3409 true scaffold_3: 6775695-6779103 Capsella rubella
Carub.0003s1898 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6777104-6779103 Capsella rubella
Carub.0003s1898 2.0kb downstream 2.0kb downstream 3409 true scaffold_3: 6773695-6777103 Capsella rubella
Carub.0003s1898 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6773695-6775694 Capsella rubella
Carub.0003s1898 5.0kb upstream 5.0kb upstream 6409 true scaffold_3: 6775695-6782103 Capsella rubella
Carub.0003s1898 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6777104-6782103 Capsella rubella
Carub.0003s1898 5.0kb downstream 5.0kb downstream 6409 true scaffold_3: 6770695-6777103 Capsella rubella
Carub.0003s1898 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6770695-6775694 Capsella rubella
Carub.0003s1898 10.0kb upstream 10.0kb upstream 11409 true scaffold_3: 6775695-6787103 Capsella rubella
Carub.0003s1898 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6777104-6787103 Capsella rubella
Carub.0003s1898 10.0kb downstream 10.0kb downstream 11409 true scaffold_3: 6765695-6777103 Capsella rubella
Carub.0003s1898 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6765695-6775694 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361954 5261 Brassicaceae View MSA
123798279 5264 Brassicales-Malvales View MSA
124349222 5266 SBM View MSA
124250835 5268 Malvidae View MSA
124061925 5270 Rosid View MSA
123742682 5271 Pentapetalae View MSA
122792550 5272 Eudicot View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain