Gene : Carub.0003s2458 C. rubella v1.1
Defline:  (1 of 1) 4.2.1.9 - Dihydroxy-acid dehydratase Genomic Order:  2458
Name:  ? Carub.0003s2458 Secondary Identifier:  ? PAC:39240780
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BRANCHED-CHAIN-AA-SYN-PWY Capsella rubella pathologic  
Crubella ILEUSYN-PWY Capsella rubella pathologic  
Crubella PWY-3001 Capsella rubella pathologic  
Crubella VALSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2458 0.5kb upstream 0.5kb upstream 4321 true scaffold_3: 9067904-9072224 Capsella rubella
Carub.0003s2458 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9071725-9072224 Capsella rubella
Carub.0003s2458 0.5kb downstream 0.5kb downstream 4321 true scaffold_3: 9067404-9071724 Capsella rubella
Carub.0003s2458 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9067404-9067903 Capsella rubella
Carub.0003s2458 1.0kb upstream 1.0kb upstream 4821 true scaffold_3: 9067904-9072724 Capsella rubella
Carub.0003s2458 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9071725-9072724 Capsella rubella
Carub.0003s2458 1.0kb downstream 1.0kb downstream 4821 true scaffold_3: 9066904-9071724 Capsella rubella
Carub.0003s2458 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9066904-9067903 Capsella rubella
Carub.0003s2458 2.0kb upstream 2.0kb upstream 5821 true scaffold_3: 9067904-9073724 Capsella rubella
Carub.0003s2458 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9071725-9073724 Capsella rubella
Carub.0003s2458 2.0kb downstream 2.0kb downstream 5821 true scaffold_3: 9065904-9071724 Capsella rubella
Carub.0003s2458 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9065904-9067903 Capsella rubella
Carub.0003s2458 5.0kb upstream 5.0kb upstream 8821 true scaffold_3: 9067904-9076724 Capsella rubella
Carub.0003s2458 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9071725-9076724 Capsella rubella
Carub.0003s2458 5.0kb downstream 5.0kb downstream 8821 true scaffold_3: 9062904-9071724 Capsella rubella
Carub.0003s2458 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9062904-9067903 Capsella rubella
Carub.0003s2458 10.0kb upstream 10.0kb upstream 13821 true scaffold_3: 9067904-9081724 Capsella rubella
Carub.0003s2458 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9071725-9081724 Capsella rubella
Carub.0003s2458 10.0kb downstream 10.0kb downstream 13821 true scaffold_3: 9057904-9071724 Capsella rubella
Carub.0003s2458 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9057904-9067903 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373960 5261 Brassicaceae View MSA
123828725 5264 Brassicales-Malvales View MSA
124341291 5266 SBM View MSA
124241984 5268 Malvidae View MSA
124066376 5270 Rosid View MSA
123742145 5271 Pentapetalae View MSA
122787783 5272 Eudicot View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain