Gene : Carub.0003s1985 C. rubella v1.1
Defline:  (1 of 2) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  1985
Name:  ? Carub.0003s1985 Secondary Identifier:  ? PAC:39241780
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1985 0.5kb upstream 0.5kb upstream 3003 true scaffold_3: 7124500-7127502 Capsella rubella
Carub.0003s1985 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7124500-7124999 Capsella rubella
Carub.0003s1985 0.5kb downstream 0.5kb downstream 3003 true scaffold_3: 7125000-7128002 Capsella rubella
Carub.0003s1985 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7127503-7128002 Capsella rubella
Carub.0003s1985 1.0kb upstream 1.0kb upstream 3503 true scaffold_3: 7124000-7127502 Capsella rubella
Carub.0003s1985 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7124000-7124999 Capsella rubella
Carub.0003s1985 1.0kb downstream 1.0kb downstream 3503 true scaffold_3: 7125000-7128502 Capsella rubella
Carub.0003s1985 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7127503-7128502 Capsella rubella
Carub.0003s1985 2.0kb upstream 2.0kb upstream 4503 true scaffold_3: 7123000-7127502 Capsella rubella
Carub.0003s1985 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7123000-7124999 Capsella rubella
Carub.0003s1985 2.0kb downstream 2.0kb downstream 4503 true scaffold_3: 7125000-7129502 Capsella rubella
Carub.0003s1985 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7127503-7129502 Capsella rubella
Carub.0003s1985 5.0kb upstream 5.0kb upstream 7503 true scaffold_3: 7120000-7127502 Capsella rubella
Carub.0003s1985 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7120000-7124999 Capsella rubella
Carub.0003s1985 5.0kb downstream 5.0kb downstream 7503 true scaffold_3: 7125000-7132502 Capsella rubella
Carub.0003s1985 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7127503-7132502 Capsella rubella
Carub.0003s1985 10.0kb upstream 10.0kb upstream 12503 true scaffold_3: 7115000-7127502 Capsella rubella
Carub.0003s1985 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7115000-7124999 Capsella rubella
Carub.0003s1985 10.0kb downstream 10.0kb downstream 12503 true scaffold_3: 7125000-7137502 Capsella rubella
Carub.0003s1985 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7127503-7137502 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378877 5261 Brassicaceae View MSA
123835862 5264 Brassicales-Malvales View MSA
124340184 5266 SBM View MSA
124254333 5268 Malvidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain