Gene : Carub.0003s1843 C. rubella v1.1
Defline:  (1 of 9) PTHR11945//PTHR11945:SF240 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN-RELATED Genomic Order:  1843
Name:  ? Carub.0003s1843 Secondary Identifier:  ? PAC:39241022
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1843 0.5kb upstream 0.5kb upstream 1709 true scaffold_3: 6543884-6545592 Capsella rubella
Carub.0003s1843 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6545093-6545592 Capsella rubella
Carub.0003s1843 0.5kb downstream 0.5kb downstream 1709 true scaffold_3: 6543384-6545092 Capsella rubella
Carub.0003s1843 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6543384-6543883 Capsella rubella
Carub.0003s1843 1.0kb upstream 1.0kb upstream 2209 true scaffold_3: 6543884-6546092 Capsella rubella
Carub.0003s1843 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6545093-6546092 Capsella rubella
Carub.0003s1843 1.0kb downstream 1.0kb downstream 2209 true scaffold_3: 6542884-6545092 Capsella rubella
Carub.0003s1843 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6542884-6543883 Capsella rubella
Carub.0003s1843 2.0kb upstream 2.0kb upstream 3209 true scaffold_3: 6543884-6547092 Capsella rubella
Carub.0003s1843 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6545093-6547092 Capsella rubella
Carub.0003s1843 2.0kb downstream 2.0kb downstream 3209 true scaffold_3: 6541884-6545092 Capsella rubella
Carub.0003s1843 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6541884-6543883 Capsella rubella
Carub.0003s1843 5.0kb upstream 5.0kb upstream 6209 true scaffold_3: 6543884-6550092 Capsella rubella
Carub.0003s1843 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6545093-6550092 Capsella rubella
Carub.0003s1843 5.0kb downstream 5.0kb downstream 6209 true scaffold_3: 6538884-6545092 Capsella rubella
Carub.0003s1843 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6538884-6543883 Capsella rubella
Carub.0003s1843 10.0kb upstream 10.0kb upstream 11209 true scaffold_3: 6543884-6555092 Capsella rubella
Carub.0003s1843 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6545093-6555092 Capsella rubella
Carub.0003s1843 10.0kb downstream 10.0kb downstream 11209 true scaffold_3: 6533884-6545092 Capsella rubella
Carub.0003s1843 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6533884-6543883 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371631 5261 Brassicaceae View MSA
123800202 5264 Brassicales-Malvales View MSA
124297646 5266 SBM View MSA
124252728 5268 Malvidae View MSA
124074162 5270 Rosid View MSA
123746234 5271 Pentapetalae View MSA
122797377 5272 Eudicot View MSA
122048647 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain