Gene : Carub.0003s3416 C. rubella v1.1
Defline:  (1 of 1) PTHR23406:SF26 - NADP-DEPENDENT MALIC ENZYME 1 Genomic Order:  3416
Name:  ? Carub.0003s3416 Secondary Identifier:  ? PAC:39242774
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-241 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3416 0.5kb upstream 0.5kb upstream 4231 true scaffold_3: 14504040-14508270 Capsella rubella
Carub.0003s3416 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14507771-14508270 Capsella rubella
Carub.0003s3416 0.5kb downstream 0.5kb downstream 4231 true scaffold_3: 14503540-14507770 Capsella rubella
Carub.0003s3416 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14503540-14504039 Capsella rubella
Carub.0003s3416 1.0kb upstream 1.0kb upstream 4731 true scaffold_3: 14504040-14508770 Capsella rubella
Carub.0003s3416 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14507771-14508770 Capsella rubella
Carub.0003s3416 1.0kb downstream 1.0kb downstream 4731 true scaffold_3: 14503040-14507770 Capsella rubella
Carub.0003s3416 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14503040-14504039 Capsella rubella
Carub.0003s3416 2.0kb upstream 2.0kb upstream 5731 true scaffold_3: 14504040-14509770 Capsella rubella
Carub.0003s3416 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14507771-14509770 Capsella rubella
Carub.0003s3416 2.0kb downstream 2.0kb downstream 5731 true scaffold_3: 14502040-14507770 Capsella rubella
Carub.0003s3416 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14502040-14504039 Capsella rubella
Carub.0003s3416 5.0kb upstream 5.0kb upstream 8731 true scaffold_3: 14504040-14512770 Capsella rubella
Carub.0003s3416 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14507771-14512770 Capsella rubella
Carub.0003s3416 5.0kb downstream 5.0kb downstream 8731 true scaffold_3: 14499040-14507770 Capsella rubella
Carub.0003s3416 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14499040-14504039 Capsella rubella
Carub.0003s3416 10.0kb upstream 10.0kb upstream 13731 true scaffold_3: 14504040-14517770 Capsella rubella
Carub.0003s3416 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14507771-14517770 Capsella rubella
Carub.0003s3416 10.0kb downstream 10.0kb downstream 13731 true scaffold_3: 14494040-14507770 Capsella rubella
Carub.0003s3416 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14494040-14504039 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370204 5261 Brassicaceae View MSA
123799916 5264 Brassicales-Malvales View MSA
124348788 5266 SBM View MSA
124247919 5268 Malvidae View MSA
124068705 5270 Rosid View MSA
123751350 5271 Pentapetalae View MSA
122794130 5272 Eudicot View MSA
122042224 5273 Angiosperm View MSA
121345569 5274 Embryophyte View MSA
123428715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain