Gene : Carub.0003s3135 C. rubella v1.1
Defline:  (1 of 2) PTHR31419:SF1 - AUXIN EFFLUX CARRIER FAMILY PROTEIN Genomic Order:  3135
Name:  ? Carub.0003s3135 Secondary Identifier:  ? PAC:39242757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3135 0.5kb upstream 0.5kb upstream 3461 true scaffold_3: 13298732-13302192 Capsella rubella
Carub.0003s3135 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13301693-13302192 Capsella rubella
Carub.0003s3135 0.5kb downstream 0.5kb downstream 3461 true scaffold_3: 13298232-13301692 Capsella rubella
Carub.0003s3135 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13298232-13298731 Capsella rubella
Carub.0003s3135 1.0kb upstream 1.0kb upstream 3961 true scaffold_3: 13298732-13302692 Capsella rubella
Carub.0003s3135 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13301693-13302692 Capsella rubella
Carub.0003s3135 1.0kb downstream 1.0kb downstream 3961 true scaffold_3: 13297732-13301692 Capsella rubella
Carub.0003s3135 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13297732-13298731 Capsella rubella
Carub.0003s3135 2.0kb upstream 2.0kb upstream 4961 true scaffold_3: 13298732-13303692 Capsella rubella
Carub.0003s3135 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13301693-13303692 Capsella rubella
Carub.0003s3135 2.0kb downstream 2.0kb downstream 4961 true scaffold_3: 13296732-13301692 Capsella rubella
Carub.0003s3135 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13296732-13298731 Capsella rubella
Carub.0003s3135 5.0kb upstream 5.0kb upstream 7961 true scaffold_3: 13298732-13306692 Capsella rubella
Carub.0003s3135 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13301693-13306692 Capsella rubella
Carub.0003s3135 5.0kb downstream 5.0kb downstream 7961 true scaffold_3: 13293732-13301692 Capsella rubella
Carub.0003s3135 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13293732-13298731 Capsella rubella
Carub.0003s3135 10.0kb upstream 10.0kb upstream 12961 true scaffold_3: 13298732-13311692 Capsella rubella
Carub.0003s3135 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13301693-13311692 Capsella rubella
Carub.0003s3135 10.0kb downstream 10.0kb downstream 12961 true scaffold_3: 13288732-13301692 Capsella rubella
Carub.0003s3135 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13288732-13298731 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370359 5261 Brassicaceae View MSA
123828869 5264 Brassicales-Malvales View MSA
124350339 5266 SBM View MSA
124239560 5268 Malvidae View MSA
124064937 5270 Rosid View MSA
123737155 5271 Pentapetalae View MSA
122792585 5272 Eudicot View MSA
122041596 5273 Angiosperm View MSA
123429004 5275 Viridiplantae View MSA
121347330 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain