Gene : Carub.0003s3172 C. rubella v1.1
Defline:  (1 of 2) PTHR23416//PTHR23416:SF63 - SIALIC ACID SYNTHASE-RELATED // SERINE ACETYLTRANSFERASE 2-RELATED Genomic Order:  3172
Name:  ? Carub.0003s3172 Secondary Identifier:  ? PAC:39241389
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CYSTSYN-PWY Capsella rubella pathologic  
Crubella PWY-6936 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3172 0.5kb upstream 0.5kb upstream 2938 true scaffold_3: 13446129-13449066 Capsella rubella
Carub.0003s3172 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13448567-13449066 Capsella rubella
Carub.0003s3172 0.5kb downstream 0.5kb downstream 2938 true scaffold_3: 13445629-13448566 Capsella rubella
Carub.0003s3172 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13445629-13446128 Capsella rubella
Carub.0003s3172 1.0kb upstream 1.0kb upstream 3438 true scaffold_3: 13446129-13449566 Capsella rubella
Carub.0003s3172 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13448567-13449566 Capsella rubella
Carub.0003s3172 1.0kb downstream 1.0kb downstream 3438 true scaffold_3: 13445129-13448566 Capsella rubella
Carub.0003s3172 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13445129-13446128 Capsella rubella
Carub.0003s3172 2.0kb upstream 2.0kb upstream 4438 true scaffold_3: 13446129-13450566 Capsella rubella
Carub.0003s3172 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13448567-13450566 Capsella rubella
Carub.0003s3172 2.0kb downstream 2.0kb downstream 4438 true scaffold_3: 13444129-13448566 Capsella rubella
Carub.0003s3172 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13444129-13446128 Capsella rubella
Carub.0003s3172 5.0kb upstream 5.0kb upstream 7438 true scaffold_3: 13446129-13453566 Capsella rubella
Carub.0003s3172 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13448567-13453566 Capsella rubella
Carub.0003s3172 5.0kb downstream 5.0kb downstream 7438 true scaffold_3: 13441129-13448566 Capsella rubella
Carub.0003s3172 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13441129-13446128 Capsella rubella
Carub.0003s3172 10.0kb upstream 10.0kb upstream 12438 true scaffold_3: 13446129-13458566 Capsella rubella
Carub.0003s3172 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13448567-13458566 Capsella rubella
Carub.0003s3172 10.0kb downstream 10.0kb downstream 12438 true scaffold_3: 13436129-13448566 Capsella rubella
Carub.0003s3172 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13436129-13446128 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363460 5261 Brassicaceae View MSA
123838527 5264 Brassicales-Malvales View MSA
124322470 5266 SBM View MSA
124240190 5268 Malvidae View MSA
124063279 5270 Rosid View MSA
123743402 5271 Pentapetalae View MSA
122788102 5272 Eudicot View MSA
122045908 5273 Angiosperm View MSA
121349787 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain