Gene : Carub.0003s3176 C. rubella v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3176
Name:  ? Carub.0003s3176 Secondary Identifier:  ? PAC:39241992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3176 0.5kb upstream 0.5kb upstream 713 true scaffold_3: 13459498-13460210 Capsella rubella
Carub.0003s3176 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13459498-13459997 Capsella rubella
Carub.0003s3176 0.5kb downstream 0.5kb downstream 713 true scaffold_3: 13459998-13460710 Capsella rubella
Carub.0003s3176 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13460211-13460710 Capsella rubella
Carub.0003s3176 1.0kb upstream 1.0kb upstream 1213 true scaffold_3: 13458998-13460210 Capsella rubella
Carub.0003s3176 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13458998-13459997 Capsella rubella
Carub.0003s3176 1.0kb downstream 1.0kb downstream 1213 true scaffold_3: 13459998-13461210 Capsella rubella
Carub.0003s3176 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13460211-13461210 Capsella rubella
Carub.0003s3176 2.0kb upstream 2.0kb upstream 2213 true scaffold_3: 13457998-13460210 Capsella rubella
Carub.0003s3176 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13457998-13459997 Capsella rubella
Carub.0003s3176 2.0kb downstream 2.0kb downstream 2213 true scaffold_3: 13459998-13462210 Capsella rubella
Carub.0003s3176 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13460211-13462210 Capsella rubella
Carub.0003s3176 5.0kb upstream 5.0kb upstream 5213 true scaffold_3: 13454998-13460210 Capsella rubella
Carub.0003s3176 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13454998-13459997 Capsella rubella
Carub.0003s3176 5.0kb downstream 5.0kb downstream 5213 true scaffold_3: 13459998-13465210 Capsella rubella
Carub.0003s3176 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13460211-13465210 Capsella rubella
Carub.0003s3176 10.0kb upstream 10.0kb upstream 10213 true scaffold_3: 13449998-13460210 Capsella rubella
Carub.0003s3176 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13449998-13459997 Capsella rubella
Carub.0003s3176 10.0kb downstream 10.0kb downstream 10213 true scaffold_3: 13459998-13470210 Capsella rubella
Carub.0003s3176 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13460211-13470210 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362654 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain