Gene : Carub.0003s3171 C. rubella v1.1
Defline:  (1 of 2) 2.6.1.52 - Phosphoserine transaminase / PSAT Genomic Order:  3171
Name:  ? Carub.0003s3171 Secondary Identifier:  ? PAC:39240824
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  
Crubella SERSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3171 0.5kb upstream 0.5kb upstream 1772 true scaffold_3: 13444114-13445885 Capsella rubella
Carub.0003s3171 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13444114-13444613 Capsella rubella
Carub.0003s3171 0.5kb downstream 0.5kb downstream 1772 true scaffold_3: 13444614-13446385 Capsella rubella
Carub.0003s3171 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13445886-13446385 Capsella rubella
Carub.0003s3171 1.0kb upstream 1.0kb upstream 2272 true scaffold_3: 13443614-13445885 Capsella rubella
Carub.0003s3171 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13443614-13444613 Capsella rubella
Carub.0003s3171 1.0kb downstream 1.0kb downstream 2272 true scaffold_3: 13444614-13446885 Capsella rubella
Carub.0003s3171 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13445886-13446885 Capsella rubella
Carub.0003s3171 2.0kb upstream 2.0kb upstream 3272 true scaffold_3: 13442614-13445885 Capsella rubella
Carub.0003s3171 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13442614-13444613 Capsella rubella
Carub.0003s3171 2.0kb downstream 2.0kb downstream 3272 true scaffold_3: 13444614-13447885 Capsella rubella
Carub.0003s3171 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13445886-13447885 Capsella rubella
Carub.0003s3171 5.0kb upstream 5.0kb upstream 6272 true scaffold_3: 13439614-13445885 Capsella rubella
Carub.0003s3171 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13439614-13444613 Capsella rubella
Carub.0003s3171 5.0kb downstream 5.0kb downstream 6272 true scaffold_3: 13444614-13450885 Capsella rubella
Carub.0003s3171 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13445886-13450885 Capsella rubella
Carub.0003s3171 10.0kb upstream 10.0kb upstream 11272 true scaffold_3: 13434614-13445885 Capsella rubella
Carub.0003s3171 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13434614-13444613 Capsella rubella
Carub.0003s3171 10.0kb downstream 10.0kb downstream 11272 true scaffold_3: 13444614-13455885 Capsella rubella
Carub.0003s3171 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13445886-13455885 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375973 5261 Brassicaceae View MSA
123837676 5264 Brassicales-Malvales View MSA
124340133 5266 SBM View MSA
124237926 5268 Malvidae View MSA
124074701 5270 Rosid View MSA
123739926 5271 Pentapetalae View MSA
122788097 5272 Eudicot View MSA
122043165 5273 Angiosperm View MSA
121346366 5274 Embryophyte View MSA
123424895 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain