Gene : Carub.0003s3228 C. rubella v1.1
Defline:  (1 of 3) PTHR31388//PTHR31388:SF16 - FAMILY NOT NAMED // PEROXIDASE 14-RELATED Genomic Order:  3228
Name:  ? Carub.0003s3228 Secondary Identifier:  ? PAC:39240249
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3228 0.5kb upstream 0.5kb upstream 1814 true scaffold_3: 13658871-13660684 Capsella rubella
Carub.0003s3228 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13660185-13660684 Capsella rubella
Carub.0003s3228 0.5kb downstream 0.5kb downstream 1814 true scaffold_3: 13658371-13660184 Capsella rubella
Carub.0003s3228 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13658371-13658870 Capsella rubella
Carub.0003s3228 1.0kb upstream 1.0kb upstream 2314 true scaffold_3: 13658871-13661184 Capsella rubella
Carub.0003s3228 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13660185-13661184 Capsella rubella
Carub.0003s3228 1.0kb downstream 1.0kb downstream 2314 true scaffold_3: 13657871-13660184 Capsella rubella
Carub.0003s3228 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13657871-13658870 Capsella rubella
Carub.0003s3228 2.0kb upstream 2.0kb upstream 3314 true scaffold_3: 13658871-13662184 Capsella rubella
Carub.0003s3228 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13660185-13662184 Capsella rubella
Carub.0003s3228 2.0kb downstream 2.0kb downstream 3314 true scaffold_3: 13656871-13660184 Capsella rubella
Carub.0003s3228 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13656871-13658870 Capsella rubella
Carub.0003s3228 5.0kb upstream 5.0kb upstream 6314 true scaffold_3: 13658871-13665184 Capsella rubella
Carub.0003s3228 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13660185-13665184 Capsella rubella
Carub.0003s3228 5.0kb downstream 5.0kb downstream 6314 true scaffold_3: 13653871-13660184 Capsella rubella
Carub.0003s3228 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13653871-13658870 Capsella rubella
Carub.0003s3228 10.0kb upstream 10.0kb upstream 11314 true scaffold_3: 13658871-13670184 Capsella rubella
Carub.0003s3228 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13660185-13670184 Capsella rubella
Carub.0003s3228 10.0kb downstream 10.0kb downstream 11314 true scaffold_3: 13648871-13660184 Capsella rubella
Carub.0003s3228 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13648871-13658870 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371157 5261 Brassicaceae View MSA
123841909 5264 Brassicales-Malvales View MSA
124350958 5266 SBM View MSA
124252962 5268 Malvidae View MSA
124074247 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain