Gene : Carub.0003s2879 C. rubella v1.1
Defline:  (1 of 4) PTHR16223//PTHR16223:SF9 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR BHLH139-RELATED Genomic Order:  2879
Name:  ? Carub.0003s2879 Secondary Identifier:  ? PAC:39240433
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2879 0.5kb upstream 0.5kb upstream 2268 true scaffold_3: 12022617-12024884 Capsella rubella
Carub.0003s2879 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12024385-12024884 Capsella rubella
Carub.0003s2879 0.5kb downstream 0.5kb downstream 2268 true scaffold_3: 12022117-12024384 Capsella rubella
Carub.0003s2879 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12022117-12022616 Capsella rubella
Carub.0003s2879 1.0kb upstream 1.0kb upstream 2768 true scaffold_3: 12022617-12025384 Capsella rubella
Carub.0003s2879 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12024385-12025384 Capsella rubella
Carub.0003s2879 1.0kb downstream 1.0kb downstream 2768 true scaffold_3: 12021617-12024384 Capsella rubella
Carub.0003s2879 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12021617-12022616 Capsella rubella
Carub.0003s2879 2.0kb upstream 2.0kb upstream 3768 true scaffold_3: 12022617-12026384 Capsella rubella
Carub.0003s2879 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12024385-12026384 Capsella rubella
Carub.0003s2879 2.0kb downstream 2.0kb downstream 3768 true scaffold_3: 12020617-12024384 Capsella rubella
Carub.0003s2879 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12020617-12022616 Capsella rubella
Carub.0003s2879 5.0kb upstream 5.0kb upstream 6768 true scaffold_3: 12022617-12029384 Capsella rubella
Carub.0003s2879 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12024385-12029384 Capsella rubella
Carub.0003s2879 5.0kb downstream 5.0kb downstream 6768 true scaffold_3: 12017617-12024384 Capsella rubella
Carub.0003s2879 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12017617-12022616 Capsella rubella
Carub.0003s2879 10.0kb upstream 10.0kb upstream 11768 true scaffold_3: 12022617-12034384 Capsella rubella
Carub.0003s2879 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12024385-12034384 Capsella rubella
Carub.0003s2879 10.0kb downstream 10.0kb downstream 11768 true scaffold_3: 12012617-12024384 Capsella rubella
Carub.0003s2879 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12012617-12022616 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365595 5261 Brassicaceae View MSA
123837086 5264 Brassicales-Malvales View MSA
124344632 5266 SBM View MSA
124254066 5268 Malvidae View MSA
124070133 5270 Rosid View MSA
123748032 5271 Pentapetalae View MSA
122792151 5272 Eudicot View MSA
122043833 5273 Angiosperm View MSA
121310197 5274 Embryophyte View MSA
123347755 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain