Gene : Carub.0003s0186 C. rubella v1.1
Defline:  (1 of 1) PTHR11476:SF7 - HISTIDYL-TRNA SYNTHETASE, ISOFORM D Genomic Order:  186
Name:  ? Carub.0003s0186 Secondary Identifier:  ? PAC:39240691
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0186 0.5kb upstream 0.5kb upstream 3679 true scaffold_3: 603569-607247 Capsella rubella
Carub.0003s0186 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 606748-607247 Capsella rubella
Carub.0003s0186 0.5kb downstream 0.5kb downstream 3679 true scaffold_3: 603069-606747 Capsella rubella
Carub.0003s0186 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 603069-603568 Capsella rubella
Carub.0003s0186 1.0kb upstream 1.0kb upstream 4179 true scaffold_3: 603569-607747 Capsella rubella
Carub.0003s0186 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 606748-607747 Capsella rubella
Carub.0003s0186 1.0kb downstream 1.0kb downstream 4179 true scaffold_3: 602569-606747 Capsella rubella
Carub.0003s0186 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 602569-603568 Capsella rubella
Carub.0003s0186 2.0kb upstream 2.0kb upstream 5179 true scaffold_3: 603569-608747 Capsella rubella
Carub.0003s0186 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 606748-608747 Capsella rubella
Carub.0003s0186 2.0kb downstream 2.0kb downstream 5179 true scaffold_3: 601569-606747 Capsella rubella
Carub.0003s0186 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 601569-603568 Capsella rubella
Carub.0003s0186 5.0kb upstream 5.0kb upstream 8179 true scaffold_3: 603569-611747 Capsella rubella
Carub.0003s0186 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 606748-611747 Capsella rubella
Carub.0003s0186 5.0kb downstream 5.0kb downstream 8179 true scaffold_3: 598569-606747 Capsella rubella
Carub.0003s0186 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 598569-603568 Capsella rubella
Carub.0003s0186 10.0kb upstream 10.0kb upstream 13179 true scaffold_3: 603569-616747 Capsella rubella
Carub.0003s0186 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 606748-616747 Capsella rubella
Carub.0003s0186 10.0kb downstream 10.0kb downstream 13179 true scaffold_3: 593569-606747 Capsella rubella
Carub.0003s0186 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 593569-603568 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364327 5261 Brassicaceae View MSA
123830698 5264 Brassicales-Malvales View MSA
124337694 5266 SBM View MSA
124242303 5268 Malvidae View MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain