Gene : Carub.0003s0611 C. rubella v1.1
Defline:  (1 of 2) PTHR23118:SF6 - ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1 Genomic Order:  611
Name:  ? Carub.0003s0611 Secondary Identifier:  ? PAC:39239715
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5172 Capsella rubella pathologic  
Crubella PWY-5173 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0611 0.5kb upstream 0.5kb upstream 4921 true scaffold_3: 2110106-2115026 Capsella rubella
Carub.0003s0611 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2114527-2115026 Capsella rubella
Carub.0003s0611 0.5kb downstream 0.5kb downstream 4921 true scaffold_3: 2109606-2114526 Capsella rubella
Carub.0003s0611 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2109606-2110105 Capsella rubella
Carub.0003s0611 1.0kb upstream 1.0kb upstream 5421 true scaffold_3: 2110106-2115526 Capsella rubella
Carub.0003s0611 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2114527-2115526 Capsella rubella
Carub.0003s0611 1.0kb downstream 1.0kb downstream 5421 true scaffold_3: 2109106-2114526 Capsella rubella
Carub.0003s0611 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2109106-2110105 Capsella rubella
Carub.0003s0611 2.0kb upstream 2.0kb upstream 6421 true scaffold_3: 2110106-2116526 Capsella rubella
Carub.0003s0611 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2114527-2116526 Capsella rubella
Carub.0003s0611 2.0kb downstream 2.0kb downstream 6421 true scaffold_3: 2108106-2114526 Capsella rubella
Carub.0003s0611 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2108106-2110105 Capsella rubella
Carub.0003s0611 5.0kb upstream 5.0kb upstream 9421 true scaffold_3: 2110106-2119526 Capsella rubella
Carub.0003s0611 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2114527-2119526 Capsella rubella
Carub.0003s0611 5.0kb downstream 5.0kb downstream 9421 true scaffold_3: 2105106-2114526 Capsella rubella
Carub.0003s0611 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2105106-2110105 Capsella rubella
Carub.0003s0611 10.0kb upstream 10.0kb upstream 14421 true scaffold_3: 2110106-2124526 Capsella rubella
Carub.0003s0611 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2114527-2124526 Capsella rubella
Carub.0003s0611 10.0kb downstream 10.0kb downstream 14421 true scaffold_3: 2100106-2114526 Capsella rubella
Carub.0003s0611 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2100106-2110105 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376807 5261 Brassicaceae View MSA
123838155 5264 Brassicales-Malvales View MSA
124340506 5266 SBM View MSA
124250755 5268 Malvidae View MSA
124062088 5270 Rosid View MSA
123736971 5271 Pentapetalae View MSA
122787632 5272 Eudicot View MSA
122045238 5273 Angiosperm View MSA
121345896 5274 Embryophyte View MSA
123427786 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain