Gene : Carub.0003s0402 C. rubella v1.1
Defline:  (1 of 2) PTHR12760 - TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  402
Name:  ? Carub.0003s0402 Secondary Identifier:  ? PAC:39242484
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0402 0.5kb upstream 0.5kb upstream 3202 true scaffold_3: 1341264-1344465 Capsella rubella
Carub.0003s0402 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1341264-1341763 Capsella rubella
Carub.0003s0402 0.5kb downstream 0.5kb downstream 3202 true scaffold_3: 1341764-1344965 Capsella rubella
Carub.0003s0402 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1344466-1344965 Capsella rubella
Carub.0003s0402 1.0kb upstream 1.0kb upstream 3702 true scaffold_3: 1340764-1344465 Capsella rubella
Carub.0003s0402 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1340764-1341763 Capsella rubella
Carub.0003s0402 1.0kb downstream 1.0kb downstream 3702 true scaffold_3: 1341764-1345465 Capsella rubella
Carub.0003s0402 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1344466-1345465 Capsella rubella
Carub.0003s0402 2.0kb upstream 2.0kb upstream 4702 true scaffold_3: 1339764-1344465 Capsella rubella
Carub.0003s0402 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1339764-1341763 Capsella rubella
Carub.0003s0402 2.0kb downstream 2.0kb downstream 4702 true scaffold_3: 1341764-1346465 Capsella rubella
Carub.0003s0402 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1344466-1346465 Capsella rubella
Carub.0003s0402 5.0kb upstream 5.0kb upstream 7702 true scaffold_3: 1336764-1344465 Capsella rubella
Carub.0003s0402 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1336764-1341763 Capsella rubella
Carub.0003s0402 5.0kb downstream 5.0kb downstream 7702 true scaffold_3: 1341764-1349465 Capsella rubella
Carub.0003s0402 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1344466-1349465 Capsella rubella
Carub.0003s0402 10.0kb upstream 10.0kb upstream 12702 true scaffold_3: 1331764-1344465 Capsella rubella
Carub.0003s0402 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1331764-1341763 Capsella rubella
Carub.0003s0402 10.0kb downstream 10.0kb downstream 12702 true scaffold_3: 1341764-1354465 Capsella rubella
Carub.0003s0402 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1344466-1354465 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375270 5261 Brassicaceae View MSA
123833743 5264 Brassicales-Malvales View MSA
124350801 5266 SBM View MSA
124243588 5268 Malvidae View MSA
124068948 5270 Rosid View MSA
123741207 5271 Pentapetalae View MSA
122787866 5272 Eudicot View MSA
122047894 5273 Angiosperm View MSA
121346659 5274 Embryophyte View MSA
123424926 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain