Gene : Carub.0003s0095 C. rubella v1.1
Defline:  (1 of 3) PTHR31235//PTHR31235:SF17 - FAMILY NOT NAMED // PEROXIDASE 27-RELATED Genomic Order:  95
Name:  ? Carub.0003s0095 Secondary Identifier:  ? PAC:39239924
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0095 0.5kb upstream 0.5kb upstream 1813 true scaffold_3: 297374-299186 Capsella rubella
Carub.0003s0095 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 297374-297873 Capsella rubella
Carub.0003s0095 0.5kb downstream 0.5kb downstream 1813 true scaffold_3: 297874-299686 Capsella rubella
Carub.0003s0095 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 299187-299686 Capsella rubella
Carub.0003s0095 1.0kb upstream 1.0kb upstream 2313 true scaffold_3: 296874-299186 Capsella rubella
Carub.0003s0095 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 296874-297873 Capsella rubella
Carub.0003s0095 1.0kb downstream 1.0kb downstream 2313 true scaffold_3: 297874-300186 Capsella rubella
Carub.0003s0095 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 299187-300186 Capsella rubella
Carub.0003s0095 2.0kb upstream 2.0kb upstream 3313 true scaffold_3: 295874-299186 Capsella rubella
Carub.0003s0095 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 295874-297873 Capsella rubella
Carub.0003s0095 2.0kb downstream 2.0kb downstream 3313 true scaffold_3: 297874-301186 Capsella rubella
Carub.0003s0095 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 299187-301186 Capsella rubella
Carub.0003s0095 5.0kb upstream 5.0kb upstream 6313 true scaffold_3: 292874-299186 Capsella rubella
Carub.0003s0095 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 292874-297873 Capsella rubella
Carub.0003s0095 5.0kb downstream 5.0kb downstream 6313 true scaffold_3: 297874-304186 Capsella rubella
Carub.0003s0095 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 299187-304186 Capsella rubella
Carub.0003s0095 10.0kb upstream 10.0kb upstream 11313 true scaffold_3: 287874-299186 Capsella rubella
Carub.0003s0095 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 287874-297873 Capsella rubella
Carub.0003s0095 10.0kb downstream 10.0kb downstream 11313 true scaffold_3: 297874-309186 Capsella rubella
Carub.0003s0095 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 299187-309186 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371938 5261 Brassicaceae View MSA
123841316 5264 Brassicales-Malvales View MSA
124340691 5266 SBM View MSA
124241136 5268 Malvidae View MSA
124071148 5270 Rosid View MSA
123748177 5271 Pentapetalae View MSA
122794454 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain