Gene : Carub.0003s0346 C. rubella v1.1
Defline:  (1 of 1) K09667 - protein O-GlcNAc transferase (OGT) Genomic Order:  346
Name:  ? Carub.0003s0346 Secondary Identifier:  ? PAC:39240050
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7437 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0346 0.5kb upstream 0.5kb upstream 7540 true scaffold_3: 1135342-1142881 Capsella rubella
Carub.0003s0346 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1142382-1142881 Capsella rubella
Carub.0003s0346 0.5kb downstream 0.5kb downstream 7540 true scaffold_3: 1134842-1142381 Capsella rubella
Carub.0003s0346 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1134842-1135341 Capsella rubella
Carub.0003s0346 1.0kb upstream 1.0kb upstream 8040 true scaffold_3: 1135342-1143381 Capsella rubella
Carub.0003s0346 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1142382-1143381 Capsella rubella
Carub.0003s0346 1.0kb downstream 1.0kb downstream 8040 true scaffold_3: 1134342-1142381 Capsella rubella
Carub.0003s0346 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1134342-1135341 Capsella rubella
Carub.0003s0346 2.0kb upstream 2.0kb upstream 9040 true scaffold_3: 1135342-1144381 Capsella rubella
Carub.0003s0346 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1142382-1144381 Capsella rubella
Carub.0003s0346 2.0kb downstream 2.0kb downstream 9040 true scaffold_3: 1133342-1142381 Capsella rubella
Carub.0003s0346 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1133342-1135341 Capsella rubella
Carub.0003s0346 5.0kb upstream 5.0kb upstream 12040 true scaffold_3: 1135342-1147381 Capsella rubella
Carub.0003s0346 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1142382-1147381 Capsella rubella
Carub.0003s0346 5.0kb downstream 5.0kb downstream 12040 true scaffold_3: 1130342-1142381 Capsella rubella
Carub.0003s0346 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1130342-1135341 Capsella rubella
Carub.0003s0346 10.0kb upstream 10.0kb upstream 17040 true scaffold_3: 1135342-1152381 Capsella rubella
Carub.0003s0346 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1142382-1152381 Capsella rubella
Carub.0003s0346 10.0kb downstream 10.0kb downstream 17040 true scaffold_3: 1125342-1142381 Capsella rubella
Carub.0003s0346 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1125342-1135341 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374740 5261 Brassicaceae View MSA
123828173 5264 Brassicales-Malvales View MSA
124345029 5266 SBM View MSA
124244353 5268 Malvidae View MSA
124065176 5270 Rosid View MSA
123737161 5271 Pentapetalae View MSA
122791107 5272 Eudicot View MSA
122047286 5273 Angiosperm View MSA
121344424 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain