Gene : Carub.0003s1377 C. rubella v1.1
Defline:  (1 of 4) PTHR31008:SF3 - COP1-INTERACTING PROTEIN-RELATED PROTEIN-RELATED Genomic Order:  1377
Name:  ? Carub.0003s1377 Secondary Identifier:  ? PAC:39239458
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1377 0.5kb upstream 0.5kb upstream 7881 true scaffold_3: 4808313-4816193 Capsella rubella
Carub.0003s1377 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4815694-4816193 Capsella rubella
Carub.0003s1377 0.5kb downstream 0.5kb downstream 7881 true scaffold_3: 4807813-4815693 Capsella rubella
Carub.0003s1377 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4807813-4808312 Capsella rubella
Carub.0003s1377 1.0kb upstream 1.0kb upstream 8381 true scaffold_3: 4808313-4816693 Capsella rubella
Carub.0003s1377 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4815694-4816693 Capsella rubella
Carub.0003s1377 1.0kb downstream 1.0kb downstream 8381 true scaffold_3: 4807313-4815693 Capsella rubella
Carub.0003s1377 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4807313-4808312 Capsella rubella
Carub.0003s1377 2.0kb upstream 2.0kb upstream 9381 true scaffold_3: 4808313-4817693 Capsella rubella
Carub.0003s1377 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4815694-4817693 Capsella rubella
Carub.0003s1377 2.0kb downstream 2.0kb downstream 9381 true scaffold_3: 4806313-4815693 Capsella rubella
Carub.0003s1377 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4806313-4808312 Capsella rubella
Carub.0003s1377 5.0kb upstream 5.0kb upstream 12381 true scaffold_3: 4808313-4820693 Capsella rubella
Carub.0003s1377 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4815694-4820693 Capsella rubella
Carub.0003s1377 5.0kb downstream 5.0kb downstream 12381 true scaffold_3: 4803313-4815693 Capsella rubella
Carub.0003s1377 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4803313-4808312 Capsella rubella
Carub.0003s1377 10.0kb upstream 10.0kb upstream 17381 true scaffold_3: 4808313-4825693 Capsella rubella
Carub.0003s1377 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4815694-4825693 Capsella rubella
Carub.0003s1377 10.0kb downstream 10.0kb downstream 17381 true scaffold_3: 4798313-4815693 Capsella rubella
Carub.0003s1377 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4798313-4808312 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378893 5261 Brassicaceae View MSA
123841431 5264 Brassicales-Malvales View MSA
124339053 5266 SBM View MSA
124251623 5268 Malvidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain