Gene : Carub.0003s1629 C. rubella v1.1
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  1629
Name:  ? Carub.0003s1629 Secondary Identifier:  ? PAC:39241684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1629 0.5kb upstream 0.5kb upstream 3479 true scaffold_3: 5754334-5757812 Capsella rubella
Carub.0003s1629 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5757313-5757812 Capsella rubella
Carub.0003s1629 0.5kb downstream 0.5kb downstream 3479 true scaffold_3: 5753834-5757312 Capsella rubella
Carub.0003s1629 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5753834-5754333 Capsella rubella
Carub.0003s1629 1.0kb upstream 1.0kb upstream 3979 true scaffold_3: 5754334-5758312 Capsella rubella
Carub.0003s1629 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5757313-5758312 Capsella rubella
Carub.0003s1629 1.0kb downstream 1.0kb downstream 3979 true scaffold_3: 5753334-5757312 Capsella rubella
Carub.0003s1629 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5753334-5754333 Capsella rubella
Carub.0003s1629 2.0kb upstream 2.0kb upstream 4979 true scaffold_3: 5754334-5759312 Capsella rubella
Carub.0003s1629 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5757313-5759312 Capsella rubella
Carub.0003s1629 2.0kb downstream 2.0kb downstream 4979 true scaffold_3: 5752334-5757312 Capsella rubella
Carub.0003s1629 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5752334-5754333 Capsella rubella
Carub.0003s1629 5.0kb upstream 5.0kb upstream 7979 true scaffold_3: 5754334-5762312 Capsella rubella
Carub.0003s1629 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5757313-5762312 Capsella rubella
Carub.0003s1629 5.0kb downstream 5.0kb downstream 7979 true scaffold_3: 5749334-5757312 Capsella rubella
Carub.0003s1629 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5749334-5754333 Capsella rubella
Carub.0003s1629 10.0kb upstream 10.0kb upstream 12979 true scaffold_3: 5754334-5767312 Capsella rubella
Carub.0003s1629 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5757313-5767312 Capsella rubella
Carub.0003s1629 10.0kb downstream 10.0kb downstream 12979 true scaffold_3: 5744334-5757312 Capsella rubella
Carub.0003s1629 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5744334-5754333 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122336158 5261 Brassicaceae Singleton cluster - no MSA
123776888 5264 Brassicales-Malvales Singleton cluster - no MSA
124275270 5266 SBM Singleton cluster - no MSA
124130669 5268 Malvidae Singleton cluster - no MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain