Gene : Carub.0003s1401 C. rubella v1.1
Defline:  (1 of 2) PTHR31707//PTHR31707:SF55 - FAMILY NOT NAMED // PECTINESTERASE 2-RELATED Genomic Order:  1401
Name:  ? Carub.0003s1401 Secondary Identifier:  ? PAC:39239782
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1401 0.5kb upstream 0.5kb upstream 3562 true scaffold_3: 4895106-4898667 Capsella rubella
Carub.0003s1401 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4898168-4898667 Capsella rubella
Carub.0003s1401 0.5kb downstream 0.5kb downstream 3562 true scaffold_3: 4894606-4898167 Capsella rubella
Carub.0003s1401 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4894606-4895105 Capsella rubella
Carub.0003s1401 1.0kb upstream 1.0kb upstream 4062 true scaffold_3: 4895106-4899167 Capsella rubella
Carub.0003s1401 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4898168-4899167 Capsella rubella
Carub.0003s1401 1.0kb downstream 1.0kb downstream 4062 true scaffold_3: 4894106-4898167 Capsella rubella
Carub.0003s1401 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4894106-4895105 Capsella rubella
Carub.0003s1401 2.0kb upstream 2.0kb upstream 5062 true scaffold_3: 4895106-4900167 Capsella rubella
Carub.0003s1401 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4898168-4900167 Capsella rubella
Carub.0003s1401 2.0kb downstream 2.0kb downstream 5062 true scaffold_3: 4893106-4898167 Capsella rubella
Carub.0003s1401 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4893106-4895105 Capsella rubella
Carub.0003s1401 5.0kb upstream 5.0kb upstream 8062 true scaffold_3: 4895106-4903167 Capsella rubella
Carub.0003s1401 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4898168-4903167 Capsella rubella
Carub.0003s1401 5.0kb downstream 5.0kb downstream 8062 true scaffold_3: 4890106-4898167 Capsella rubella
Carub.0003s1401 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4890106-4895105 Capsella rubella
Carub.0003s1401 10.0kb upstream 10.0kb upstream 13062 true scaffold_3: 4895106-4908167 Capsella rubella
Carub.0003s1401 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4898168-4908167 Capsella rubella
Carub.0003s1401 10.0kb downstream 10.0kb downstream 13062 true scaffold_3: 4885106-4898167 Capsella rubella
Carub.0003s1401 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4885106-4895105 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367775 5261 Brassicaceae View MSA
123841223 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain