Gene : Carub.0003s1426 C. rubella v1.1
Defline:  (1 of 1) PF04652//PF14288 - Vta1 like (Vta1) // 1,3-beta-glucan synthase subunit FKS1, domain-1 (FKS1_dom1) Genomic Order:  1426
Name:  ? Carub.0003s1426 Secondary Identifier:  ? PAC:39241227
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6773 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1426 0.5kb upstream 0.5kb upstream 5890 true scaffold_3: 5009638-5015527 Capsella rubella
Carub.0003s1426 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5009638-5010137 Capsella rubella
Carub.0003s1426 0.5kb downstream 0.5kb downstream 5890 true scaffold_3: 5010138-5016027 Capsella rubella
Carub.0003s1426 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5015528-5016027 Capsella rubella
Carub.0003s1426 1.0kb upstream 1.0kb upstream 6390 true scaffold_3: 5009138-5015527 Capsella rubella
Carub.0003s1426 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5009138-5010137 Capsella rubella
Carub.0003s1426 1.0kb downstream 1.0kb downstream 6390 true scaffold_3: 5010138-5016527 Capsella rubella
Carub.0003s1426 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5015528-5016527 Capsella rubella
Carub.0003s1426 2.0kb upstream 2.0kb upstream 7390 true scaffold_3: 5008138-5015527 Capsella rubella
Carub.0003s1426 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5008138-5010137 Capsella rubella
Carub.0003s1426 2.0kb downstream 2.0kb downstream 7390 true scaffold_3: 5010138-5017527 Capsella rubella
Carub.0003s1426 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5015528-5017527 Capsella rubella
Carub.0003s1426 5.0kb upstream 5.0kb upstream 10390 true scaffold_3: 5005138-5015527 Capsella rubella
Carub.0003s1426 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5005138-5010137 Capsella rubella
Carub.0003s1426 5.0kb downstream 5.0kb downstream 10390 true scaffold_3: 5010138-5020527 Capsella rubella
Carub.0003s1426 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5015528-5020527 Capsella rubella
Carub.0003s1426 10.0kb upstream 10.0kb upstream 15390 true scaffold_3: 5000138-5015527 Capsella rubella
Carub.0003s1426 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5000138-5010137 Capsella rubella
Carub.0003s1426 10.0kb downstream 10.0kb downstream 15390 true scaffold_3: 5010138-5025527 Capsella rubella
Carub.0003s1426 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5015528-5025527 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122336121 5261 Brassicaceae Singleton cluster - no MSA
123776851 5264 Brassicales-Malvales Singleton cluster - no MSA
124275233 5266 SBM Singleton cluster - no MSA
124252791 5268 Malvidae View MSA
124051035 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain