Gene : Carub.0003s0890 C. rubella v1.1
Defline:  (1 of 5) 1.1.1.41 - Isocitrate dehydrogenase (NAD(+)) / Nicotinamide adenine dinucleotide isocitrate dehydrogenase Genomic Order:  890
Name:  ? Carub.0003s0890 Secondary Identifier:  ? PAC:39240712
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY-6549 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0890 0.5kb upstream 0.5kb upstream 3232 true scaffold_3: 3036722-3039953 Capsella rubella
Carub.0003s0890 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3036722-3037221 Capsella rubella
Carub.0003s0890 0.5kb downstream 0.5kb downstream 3232 true scaffold_3: 3037222-3040453 Capsella rubella
Carub.0003s0890 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3039954-3040453 Capsella rubella
Carub.0003s0890 1.0kb upstream 1.0kb upstream 3732 true scaffold_3: 3036222-3039953 Capsella rubella
Carub.0003s0890 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3036222-3037221 Capsella rubella
Carub.0003s0890 1.0kb downstream 1.0kb downstream 3732 true scaffold_3: 3037222-3040953 Capsella rubella
Carub.0003s0890 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3039954-3040953 Capsella rubella
Carub.0003s0890 2.0kb upstream 2.0kb upstream 4732 true scaffold_3: 3035222-3039953 Capsella rubella
Carub.0003s0890 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3035222-3037221 Capsella rubella
Carub.0003s0890 2.0kb downstream 2.0kb downstream 4732 true scaffold_3: 3037222-3041953 Capsella rubella
Carub.0003s0890 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3039954-3041953 Capsella rubella
Carub.0003s0890 5.0kb upstream 5.0kb upstream 7732 true scaffold_3: 3032222-3039953 Capsella rubella
Carub.0003s0890 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3032222-3037221 Capsella rubella
Carub.0003s0890 5.0kb downstream 5.0kb downstream 7732 true scaffold_3: 3037222-3044953 Capsella rubella
Carub.0003s0890 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3039954-3044953 Capsella rubella
Carub.0003s0890 10.0kb upstream 10.0kb upstream 12732 true scaffold_3: 3027222-3039953 Capsella rubella
Carub.0003s0890 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3027222-3037221 Capsella rubella
Carub.0003s0890 10.0kb downstream 10.0kb downstream 12732 true scaffold_3: 3037222-3049953 Capsella rubella
Carub.0003s0890 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3039954-3049953 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510628 5273 Angiosperm View MSA
122366336 5261 Brassicaceae View MSA
123799151 5264 Brassicales-Malvales View MSA
124296699 5266 SBM View MSA
124148776 5268 Malvidae View MSA
123874707 5270 Rosid View MSA
123458637 5271 Pentapetalae View MSA
122494038 5272 Eudicot View MSA
120783717 5274 Embryophyte View MSA
123425496 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain