Gene : Carub.0003s1161 C. rubella v1.1
Defline:  (1 of 2) PTHR22952:SF206 - TRANSCRIPTION FACTOR TGA2 Genomic Order:  1161
Name:  ? Carub.0003s1161 Secondary Identifier:  ? PAC:39240179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1161 0.5kb upstream 0.5kb upstream 3262 true scaffold_3: 3995517-3998778 Capsella rubella
Carub.0003s1161 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3995517-3996016 Capsella rubella
Carub.0003s1161 0.5kb downstream 0.5kb downstream 3262 true scaffold_3: 3996017-3999278 Capsella rubella
Carub.0003s1161 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3998779-3999278 Capsella rubella
Carub.0003s1161 1.0kb upstream 1.0kb upstream 3762 true scaffold_3: 3995017-3998778 Capsella rubella
Carub.0003s1161 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3995017-3996016 Capsella rubella
Carub.0003s1161 1.0kb downstream 1.0kb downstream 3762 true scaffold_3: 3996017-3999778 Capsella rubella
Carub.0003s1161 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3998779-3999778 Capsella rubella
Carub.0003s1161 2.0kb upstream 2.0kb upstream 4762 true scaffold_3: 3994017-3998778 Capsella rubella
Carub.0003s1161 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3994017-3996016 Capsella rubella
Carub.0003s1161 2.0kb downstream 2.0kb downstream 4762 true scaffold_3: 3996017-4000778 Capsella rubella
Carub.0003s1161 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3998779-4000778 Capsella rubella
Carub.0003s1161 5.0kb upstream 5.0kb upstream 7762 true scaffold_3: 3991017-3998778 Capsella rubella
Carub.0003s1161 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3991017-3996016 Capsella rubella
Carub.0003s1161 5.0kb downstream 5.0kb downstream 7762 true scaffold_3: 3996017-4003778 Capsella rubella
Carub.0003s1161 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3998779-4003778 Capsella rubella
Carub.0003s1161 10.0kb upstream 10.0kb upstream 12762 true scaffold_3: 3986017-3998778 Capsella rubella
Carub.0003s1161 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3986017-3996016 Capsella rubella
Carub.0003s1161 10.0kb downstream 10.0kb downstream 12762 true scaffold_3: 3996017-4008778 Capsella rubella
Carub.0003s1161 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3998779-4008778 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381711 5261 Brassicaceae View MSA
123838578 5264 Brassicales-Malvales View MSA
124348363 5266 SBM View MSA
124249581 5268 Malvidae View MSA
124069977 5270 Rosid View MSA
123742396 5271 Pentapetalae View MSA
122790944 5272 Eudicot View MSA
122048650 5273 Angiosperm View MSA
121349382 5274 Embryophyte View MSA
123426504 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain