Gene : Carub.0003s1215 C. rubella v1.1
Defline:  (1 of 1) PTHR11406:SF8 - PHOSPHOGLYCERATE KINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1215
Name:  ? Carub.0003s1215 Secondary Identifier:  ? PAC:39242483
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella CALVIN-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1215 0.5kb upstream 0.5kb upstream 3025 true scaffold_3: 4160592-4163616 Capsella rubella
Carub.0003s1215 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4163117-4163616 Capsella rubella
Carub.0003s1215 0.5kb downstream 0.5kb downstream 3025 true scaffold_3: 4160092-4163116 Capsella rubella
Carub.0003s1215 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4160092-4160591 Capsella rubella
Carub.0003s1215 1.0kb upstream 1.0kb upstream 3525 true scaffold_3: 4160592-4164116 Capsella rubella
Carub.0003s1215 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4163117-4164116 Capsella rubella
Carub.0003s1215 1.0kb downstream 1.0kb downstream 3525 true scaffold_3: 4159592-4163116 Capsella rubella
Carub.0003s1215 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4159592-4160591 Capsella rubella
Carub.0003s1215 2.0kb upstream 2.0kb upstream 4525 true scaffold_3: 4160592-4165116 Capsella rubella
Carub.0003s1215 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4163117-4165116 Capsella rubella
Carub.0003s1215 2.0kb downstream 2.0kb downstream 4525 true scaffold_3: 4158592-4163116 Capsella rubella
Carub.0003s1215 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4158592-4160591 Capsella rubella
Carub.0003s1215 5.0kb upstream 5.0kb upstream 7525 true scaffold_3: 4160592-4168116 Capsella rubella
Carub.0003s1215 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4163117-4168116 Capsella rubella
Carub.0003s1215 5.0kb downstream 5.0kb downstream 7525 true scaffold_3: 4155592-4163116 Capsella rubella
Carub.0003s1215 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4155592-4160591 Capsella rubella
Carub.0003s1215 10.0kb upstream 10.0kb upstream 12525 true scaffold_3: 4160592-4173116 Capsella rubella
Carub.0003s1215 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4163117-4173116 Capsella rubella
Carub.0003s1215 10.0kb downstream 10.0kb downstream 12525 true scaffold_3: 4150592-4163116 Capsella rubella
Carub.0003s1215 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4150592-4160591 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366001 5261 Brassicaceae View MSA
123832866 5264 Brassicales-Malvales View MSA
124347781 5266 SBM View MSA
124238345 5268 Malvidae View MSA
124066937 5270 Rosid View MSA
123738509 5271 Pentapetalae View MSA
122793227 5272 Eudicot View MSA
122042825 5273 Angiosperm View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain