Gene : Carub.0003s0696 C. rubella v1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF36 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2 Genomic Order:  696
Name:  ? Carub.0003s0696 Secondary Identifier:  ? PAC:39239201
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0696 0.5kb upstream 0.5kb upstream 3352 true scaffold_3: 2405696-2409047 Capsella rubella
Carub.0003s0696 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2408548-2409047 Capsella rubella
Carub.0003s0696 0.5kb downstream 0.5kb downstream 3352 true scaffold_3: 2405196-2408547 Capsella rubella
Carub.0003s0696 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2405196-2405695 Capsella rubella
Carub.0003s0696 1.0kb upstream 1.0kb upstream 3852 true scaffold_3: 2405696-2409547 Capsella rubella
Carub.0003s0696 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2408548-2409547 Capsella rubella
Carub.0003s0696 1.0kb downstream 1.0kb downstream 3852 true scaffold_3: 2404696-2408547 Capsella rubella
Carub.0003s0696 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2404696-2405695 Capsella rubella
Carub.0003s0696 2.0kb upstream 2.0kb upstream 4852 true scaffold_3: 2405696-2410547 Capsella rubella
Carub.0003s0696 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2408548-2410547 Capsella rubella
Carub.0003s0696 2.0kb downstream 2.0kb downstream 4852 true scaffold_3: 2403696-2408547 Capsella rubella
Carub.0003s0696 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2403696-2405695 Capsella rubella
Carub.0003s0696 5.0kb upstream 5.0kb upstream 7852 true scaffold_3: 2405696-2413547 Capsella rubella
Carub.0003s0696 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2408548-2413547 Capsella rubella
Carub.0003s0696 5.0kb downstream 5.0kb downstream 7852 true scaffold_3: 2400696-2408547 Capsella rubella
Carub.0003s0696 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2400696-2405695 Capsella rubella
Carub.0003s0696 10.0kb upstream 10.0kb upstream 12852 true scaffold_3: 2405696-2418547 Capsella rubella
Carub.0003s0696 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2408548-2418547 Capsella rubella
Carub.0003s0696 10.0kb downstream 10.0kb downstream 12852 true scaffold_3: 2395696-2408547 Capsella rubella
Carub.0003s0696 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2395696-2405695 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371956 5261 Brassicaceae View MSA
123830836 5264 Brassicales-Malvales View MSA
124344086 5266 SBM View MSA
124250826 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain