Gene : Carub.0003s0957 C. rubella v1.1
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  957
Name:  ? Carub.0003s0957 Secondary Identifier:  ? PAC:39239491
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6441 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0957 0.5kb upstream 0.5kb upstream 4027 true scaffold_3: 3291177-3295203 Capsella rubella
Carub.0003s0957 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3291177-3291676 Capsella rubella
Carub.0003s0957 0.5kb downstream 0.5kb downstream 4027 true scaffold_3: 3291677-3295703 Capsella rubella
Carub.0003s0957 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3295204-3295703 Capsella rubella
Carub.0003s0957 1.0kb upstream 1.0kb upstream 4527 true scaffold_3: 3290677-3295203 Capsella rubella
Carub.0003s0957 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3290677-3291676 Capsella rubella
Carub.0003s0957 1.0kb downstream 1.0kb downstream 4527 true scaffold_3: 3291677-3296203 Capsella rubella
Carub.0003s0957 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3295204-3296203 Capsella rubella
Carub.0003s0957 2.0kb upstream 2.0kb upstream 5527 true scaffold_3: 3289677-3295203 Capsella rubella
Carub.0003s0957 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3289677-3291676 Capsella rubella
Carub.0003s0957 2.0kb downstream 2.0kb downstream 5527 true scaffold_3: 3291677-3297203 Capsella rubella
Carub.0003s0957 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3295204-3297203 Capsella rubella
Carub.0003s0957 5.0kb upstream 5.0kb upstream 8527 true scaffold_3: 3286677-3295203 Capsella rubella
Carub.0003s0957 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3286677-3291676 Capsella rubella
Carub.0003s0957 5.0kb downstream 5.0kb downstream 8527 true scaffold_3: 3291677-3300203 Capsella rubella
Carub.0003s0957 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3295204-3300203 Capsella rubella
Carub.0003s0957 10.0kb upstream 10.0kb upstream 13527 true scaffold_3: 3281677-3295203 Capsella rubella
Carub.0003s0957 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3281677-3291676 Capsella rubella
Carub.0003s0957 10.0kb downstream 10.0kb downstream 13527 true scaffold_3: 3291677-3305203 Capsella rubella
Carub.0003s0957 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3295204-3305203 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362933 5261 Brassicaceae View MSA
123830834 5264 Brassicales-Malvales View MSA
124341216 5266 SBM View MSA
124237182 5268 Malvidae View MSA
124068541 5270 Rosid View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain